Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a15
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...   223   2e-58
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   3.1  
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   4.1  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   9.5  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   9.5  
AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction ...    28   9.5  
AF067219-9|AAX88822.1|  266|Caenorhabditis elegans Innexin prote...    28   9.5  
AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin prote...    28   9.5  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    28   9.5  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score =  223 bits (544), Expect = 2e-58
 Identities = 109/172 (63%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
 Frame = -3

Query: 660 SGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS-SAYTITDTVVYRIEIEELKNGK 484
           SGN   A  +T WV  E G LRV+ V+HH++GE  P    Y IT+ VVY IEIEELKNGK
Sbjct: 263 SGNADFATAITRWVMKESGVLRVKTVNHHKKGETVPPVEGYFITEDVVYTIEIEELKNGK 322

Query: 483 WQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLY 304
           W PF+  DVQLEFVRIDPF+R TL K  NG     FK+PDV GV++F VDY RVGYT LY
Sbjct: 323 WVPFQGKDVQLEFVRIDPFVRATL-KNSNGRLSVAFKLPDVLGVFKFLVDYRRVGYTHLY 381

Query: 303 HSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPK 148
              QVSVRPL HTQYERFI SAYPYY SSFSMM G+ LFS V+LY+K+   K
Sbjct: 382 DVQQVSVRPLWHTQYERFIRSAYPYYASSFSMMAGLVLFSIVYLYHKDTPVK 433



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -2

Query: 823 STPHAVGRKTVLIAALQARNNARIVF 746
           + P   G +T+L+  LQ+RNNARIVF
Sbjct: 210 TNPSIAGSRTLLVGGLQSRNNARIVF 235


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 615 QTPIQ*GESRESCCLIHLTLFCHHVLL 695
           Q P Q   +   CCLI LT+F  H+LL
Sbjct: 150 QPPFQSCTNSPPCCLIILTIFLKHILL 176


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 548 LDGSFSPCL*WSTLRTRKRPRSPNTHSVRRIARILLPDTSDFVLSPCTFVTGELKASS 721
           L   F+P + W  L  R R R+P     +R+A   + DT+  + SP T +     A S
Sbjct: 63  LGQEFTPPVTWERLVQRMRARAPRIQGEQRVA---ISDTNIVIQSPNTVIDSPAPARS 117


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = -3

Query: 513 IEIEELKNGKWQPFEAN---DVQL-EFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQ 346
           IEI   K+  + P +A    D+ L    RI P   + LQ     V+EA+  + D     +
Sbjct: 579 IEISRNKSHIFHPLDAKLVLDILLIASERILPLTSSALQHPCQAVWEAIQNLVD----QE 634

Query: 345 FK-VDYDRVGYTRLYHSTQVSVRP 277
           F  +DYD++G + +  + +V +RP
Sbjct: 635 FDWLDYDQIGTSAMRFALEVYLRP 658


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 650 LLPDTSDFVLSPCTFVTGELKASSEKKNNDPLKNNTSIVSCLQS 781
           +L DT++ ++  C F     K  S +K  D L N TS  + LQ+
Sbjct: 280 VLKDTTNTLMPACQFTGTSQKLLSFQKEIDSLNNVTSTTTTLQT 323


>Z32682-6|CAA83614.1|  200|Caenorhabditis elegans Hypothetical
           protein M04D8.6 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 252 FIPSAYPYYVSSFSMMIGVFLFSFV 178
           +IP  YPY+++ F + I   LF+ V
Sbjct: 51  YIPKYYPYFLNQFLLTIAFALFNIV 75


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
            protein 5, isoformb protein.
          Length = 1306

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 497  SSSISILYTTVSVIV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 628
            +S+I ++   V+V + A+ G  + C+ WS  +T +R  S  +HS
Sbjct: 1122 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1165


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 497  SSSISILYTTVSVIV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 628
            +S+I ++   V+V + A+ G  + C+ WS  +T +R  S  +HS
Sbjct: 1266 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1309


>AF303262-1|AAG50220.1|  362|Caenorhabditis elegans gap junction
           innexin protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  GRWTSLIDSRCLTLNTHYIQINTS 131
           G W    +S CL  NT+Y+ +N S
Sbjct: 60  GGWEEYAESYCLIENTYYVHMNNS 83


>AF067219-9|AAX88822.1|  266|Caenorhabditis elegans Innexin protein
           17, isoform b protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  GRWTSLIDSRCLTLNTHYIQINTS 131
           G W    +S CL  NT+Y+ +N S
Sbjct: 60  GGWEEYAESYCLIENTYYVHMNNS 83


>AF067219-8|AAC17025.1|  362|Caenorhabditis elegans Innexin protein
           17, isoform a protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  GRWTSLIDSRCLTLNTHYIQINTS 131
           G W    +S CL  NT+Y+ +N S
Sbjct: 60  GGWEEYAESYCLIENTYYVHMNNS 83


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 267 TQYERFIPSAYPYYVSSFSMMIGVFLFSF 181
           T+ E+FI S YP Y+S F  +    ++ F
Sbjct: 156 TRREKFIESRYPKYLSEFKNLSNFAIYQF 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,951,928
Number of Sequences: 27780
Number of extensions: 430198
Number of successful extensions: 1240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)