Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a13
         (449 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p pro...   227   7e-60
AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC...   227   7e-60
Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal prot...   223   7e-59
U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal prot...   223   7e-59
AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p pro...   223   7e-59
AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB...   223   7e-59
AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA...   223   7e-59
X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal prot...   182   3e-46
BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p pro...    55   4e-08
AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB...    28   6.7  
BT024209-1|ABC86271.1|  480|Drosophila melanogaster RE32713p pro...    27   8.8  
AY113651-1|AAM29656.1| 1019|Drosophila melanogaster SD13650p pro...    27   8.8  
AY069273-1|AAL39418.1|  421|Drosophila melanogaster GM10003p pro...    27   8.8  
AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3 ...    27   8.8  
AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,...    27   8.8  
AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,...    27   8.8  

>BT011442-1|AAR99100.1|  147|Drosophila melanogaster RE59709p
           protein.
          Length = 147

 Score =  227 bits (554), Expect = 7e-60
 Identities = 102/125 (81%), Positives = 112/125 (89%)
 Frame = -1

Query: 386 YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 207
           +KM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 206 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 27
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 26  IRVTN 12
           +R+TN
Sbjct: 132 VRLTN 136


>AE014297-4525|AAN14210.1|  147|Drosophila melanogaster CG7939-PC,
           isoform C protein.
          Length = 147

 Score =  227 bits (554), Expect = 7e-60
 Identities = 102/125 (81%), Positives = 112/125 (89%)
 Frame = -1

Query: 386 YKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 207
           +KM IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIG
Sbjct: 12  FKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIG 71

Query: 206 YGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLS 27
           YGSNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS
Sbjct: 72  YGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLS 131

Query: 26  IRVTN 12
           +R+TN
Sbjct: 132 VRLTN 136


>Y13939-1|CAA74278.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  223 bits (546), Expect = 7e-59
 Identities = 101/123 (82%), Positives = 110/123 (89%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 20  VTN 12
           +TN
Sbjct: 121 LTN 123


>U92431-1|AAB51389.1|  134|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 134

 Score =  223 bits (546), Expect = 7e-59
 Identities = 101/123 (82%), Positives = 110/123 (89%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 20  VTN 12
           +TN
Sbjct: 121 LTN 123


>AY070656-1|AAL48127.1|  134|Drosophila melanogaster RH03940p
           protein.
          Length = 134

 Score =  223 bits (546), Expect = 7e-59
 Identities = 101/123 (82%), Positives = 110/123 (89%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 20  VTN 12
           +TN
Sbjct: 121 LTN 123


>AE014297-4527|AAN14211.1|  134|Drosophila melanogaster CG7939-PB,
           isoform B protein.
          Length = 134

 Score =  223 bits (546), Expect = 7e-59
 Identities = 101/123 (82%), Positives = 110/123 (89%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 20  VTN 12
           +TN
Sbjct: 121 LTN 123


>AE014297-4526|AAF57001.1|  134|Drosophila melanogaster CG7939-PA,
           isoform A protein.
          Length = 134

 Score =  223 bits (546), Expect = 7e-59
 Identities = 101/123 (82%), Positives = 110/123 (89%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQNR YC EIAHGVSSKKRK IVERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVR 120

Query: 20  VTN 12
           +TN
Sbjct: 121 LTN 123


>X00848-1|CAA25404.1|  133|Drosophila melanogaster ribosomal protein
           49 protein.
          Length = 133

 Score =  182 bits (442), Expect = 3e-46
 Identities = 85/120 (70%), Positives = 97/120 (80%)
 Frame = -1

Query: 380 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 201
           M IRP YRP IVKKRTK FIRHQSDRY KL   WRKP+GIDNRV RRFKGQYLMPNIGYG
Sbjct: 1   MTIRPAYRPKIVKKRTKDFIRHQSDRYAKLSHKWRKPKGIDNRVGRRFKGQYLMPNIGYG 60

Query: 200 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 21
           SNK+TRHMLP GF+K LVHNV+ELE+L+MQN +   E+    S  + K I+ERA+QLS+R
Sbjct: 61  SNKRTRHMLPTGFKKFLVHNVRELEVLLMQNPRLLREMP-TASPPRSKEIIERAKQLSLR 119


>BT030157-1|ABN49296.1|  126|Drosophila melanogaster IP17707p
           protein.
          Length = 126

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/71 (43%), Positives = 41/71 (57%)
 Frame = -3

Query: 264 Y*QQSPQAVQGSILDAQHWLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDR 85
           Y QQS   +QG++ DAQH LR +Q  P +A   I   P +Q  RAG    A+  +LRRDR
Sbjct: 7   YRQQSASPLQGTVSDAQHRLRIEQAHPPHAAHRIQEVPGAQRARAGGPAHAEPRLLRRDR 66

Query: 84  SWCLFEEAEAD 52
              L +EA+ D
Sbjct: 67  PRRLLQEAQGD 77


>AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB
           protein.
          Length = 5146

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 FDDCRPVNRSYSHLVCFFKKRDSEPRGDTAAREGKS 449
           FD    V  S  +LV   ++R S+P GDTA   G +
Sbjct: 746 FDKVLKVLLSPDYLVAMRRRRSSDPLGDTATNLGNA 781


>BT024209-1|ABC86271.1|  480|Drosophila melanogaster RE32713p
           protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 446 FPFSCGRVTAWFTVAFLKETYKMAIRPVYRPTIVKKRTKRFI 321
           F +     + WF VAF  E +   I P+ R T+   R  + +
Sbjct: 137 FSYLASFCSVWFVVAFTVERFIAVINPLKRQTMCTVRRAKIV 178


>AY113651-1|AAM29656.1| 1019|Drosophila melanogaster SD13650p
           protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 389 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWR 276
           T +MA        +    +K+F+  +S +Y K+K+ WR
Sbjct: 841 TQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWR 878


>AY069273-1|AAL39418.1|  421|Drosophila melanogaster GM10003p
           protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 389 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWR 276
           T +MA        +    +K+F+  +S +Y K+K+ WR
Sbjct: 243 TQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWR 280


>AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3
            protein.
          Length = 2422

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 389  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWR 276
            T +MA        +    +K+F+  +S +Y K+K+ WR
Sbjct: 2244 TQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWR 2281


>AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,
            isoform D protein.
          Length = 2431

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 389  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWR 276
            T +MA        +    +K+F+  +S +Y K+K+ WR
Sbjct: 2253 TQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWR 2290


>AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,
            isoform C protein.
          Length = 2410

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 389  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWR 276
            T +MA        +    +K+F+  +S +Y K+K+ WR
Sbjct: 2232 TQRMANSAAIAGEVACPYSKQFVHSKSSQYKKMKQEWR 2269


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,262,706
Number of Sequences: 53049
Number of extensions: 400712
Number of successful extensions: 1363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)