Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a07
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   151   1e-37
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    69   8e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    64   2e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    43   6e-05
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.3  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.1  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   7.1  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    25   9.4  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  151 bits (366), Expect = 1e-37
 Identities = 66/81 (81%), Positives = 76/81 (93%)
 Frame = -3

Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
           IP+NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMD 404

Query: 607 EMEFTEAESNMNDLVSEYQQY 545
           EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
 Frame = -3

Query: 784 PNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 629
           P   K  +CD PP+ ++         A   + N+T+I E + R+  +F  M+ ++AF+HW
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407

Query: 628 YTGEGMDEMEFTEAESNMNDLVSEYQQ 548
           Y GEGM+E EF+EA  ++  L  +Y++
Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
 Frame = -3

Query: 784 PNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 629
           P   K  +C  PP+ +          A   + N+T+I E + R+  +F  M+ ++AF+HW
Sbjct: 352 PTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 411

Query: 628 YTGEGMDEMEFTEAESNMNDLVSEYQQ 548
           Y GEGM+E EF+EA  ++  L  +Y++
Sbjct: 412 YVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
 Frame = -3

Query: 736 KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DL 566
           +++   + N T+I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL
Sbjct: 372 RVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431

Query: 565 VSEYQ 551
           ++EY+
Sbjct: 432 INEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 712 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 605
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 395 FCFSYLYSNFNSFRLQHA**NNLGSTR 315
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 614  ALAGVPMQESLAPEHSGEL---FRDALEQLLDGGGISNEGGGHLETTRRNVAH 763
            A  G+P  +S+   HS EL   F   L+  ++    SNE   H + TR  + +
Sbjct: 1212 ASKGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY 1264


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 755 HSSSWSQDGRHLHWKFHRHP 696
           H   +    RH +WK H HP
Sbjct: 65  HKQKFEHQFRHGYWKLHPHP 84


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 295 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 206
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 425 LSPFERSTLYFCFSYLYSNF 366
           +SP++R+ L FCFS L  +F
Sbjct: 96  VSPYKRAFLEFCFSSLVLHF 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,816
Number of Sequences: 5004
Number of extensions: 48614
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)