Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a07
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 167 1e-41
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 165 4e-41
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 165 4e-41
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 165 5e-41
03_01_0034 + 318432-318825,318902-319851 164 6e-41
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 164 8e-41
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 163 2e-40
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 158 5e-39
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 69 3e-12
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 69 4e-12
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 69 6e-12
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 67 1e-11
03_06_0593 + 34946665-34946952,34947484-34947798,34948246-349483... 30 2.4
02_05_1127 + 34292894-34293284,34293948-34295443 29 3.2
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 4.2
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 5.6
03_05_0635 + 26303130-26303570 29 5.6
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 5.6
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 7.4
12_02_0614 - 21172290-21172480,21174927-21175164 28 9.7
04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280 28 9.7
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 167 bits (405), Expect = 1e-41
Identities = 73/81 (90%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPPRGLKMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLV+EYQQY
Sbjct: 405 EMEFTEAESNMNDLVAEYQQY 425
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 165 bits (401), Expect = 4e-41
Identities = 73/81 (90%), Positives = 80/81 (98%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPPRGL MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 366 IPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 425
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 426 EMEFTEAESNMNDLVSEYQQY 446
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 165 bits (401), Expect = 4e-41
Identities = 73/81 (90%), Positives = 80/81 (98%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPPRGL MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 165 bits (400), Expect = 5e-41
Identities = 72/81 (88%), Positives = 80/81 (98%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPPRGL MA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 525 IPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 584
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 585 EMEFTEAESNMNDLVSEYQQY 605
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 164 bits (399), Expect = 6e-41
Identities = 73/81 (90%), Positives = 79/81 (97%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 164 bits (398), Expect = 8e-41
Identities = 72/81 (88%), Positives = 80/81 (98%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLV+EYQQY
Sbjct: 405 EMEFTEAESNMNDLVAEYQQY 425
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 163 bits (395), Expect = 2e-40
Identities = 72/81 (88%), Positives = 80/81 (98%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLV+EYQQY
Sbjct: 405 EMEFTEAESNMNDLVAEYQQY 425
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 158 bits (383), Expect = 5e-39
Identities = 69/81 (85%), Positives = 78/81 (96%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVK++VCDIPP GL MA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYT EGMD
Sbjct: 361 IPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMD 420
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLV+EYQQY
Sbjct: 421 EMEFTEAESNMNDLVAEYQQY 441
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 69.3 bits (162), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 452 VRRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 511
Query: 559 EYQQ 548
+Y++
Sbjct: 512 DYEE 515
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 68.9 bits (161), Expect = 4e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 559 EYQQ 548
+Y++
Sbjct: 431 DYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 68.5 bits (160), Expect = 6e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVVEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 559 EYQQ 548
+Y++
Sbjct: 431 DYEE 434
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 67.3 bits (157), Expect = 1e-11
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 559 EYQQ 548
+Y++
Sbjct: 431 DYEE 434
>03_06_0593 +
34946665-34946952,34947484-34947798,34948246-34948374,
34948774-34949169
Length = 375
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 701 GGGISNEGGGHLETTRRNVAHGGLHVVGD 787
G G+ N+GGG ETT +N H VV +
Sbjct: 320 GIGVGNDGGGMAETTTKNQLHSPHFVVDE 348
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 508 RQTLRPRRRWPPGTVGTRRQG 570
R T +P+RRWPPG+ G +G
Sbjct: 83 RATGQPKRRWPPGSSGGGARG 103
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 490 SPAPAPRQTLRPRRRWPP 543
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 487 RSPAPAPRQTLRPRRRWPPGTVGT 558
R+PAP PR+ +R R R P V T
Sbjct: 31 RAPAPPPREVVRVRLRLTPAPVAT 54
>03_05_0635 + 26303130-26303570
Length = 146
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 686 EQLLDGGGISNEGGGHLETTRR 751
E LLDGGG + GGG L T R
Sbjct: 28 EDLLDGGGYNPRGGGSLGTGAR 49
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 561 ETRSFMLLSASVNSISSMPSPVYQCKKALRLNIAVNCSEMR 683
E RS LL A N + +P+ + + LN++ N S+MR
Sbjct: 328 EMRSLRLLDAHFNQLRGLPAGIGRLAALESLNLSSNFSDMR 368
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 582 LSASVNSISSMPSPVYQCKKALRLNIAVN 668
L+AS N+IS +P + C K RLN+ N
Sbjct: 142 LNASNNTISVLPDELAGCSKLFRLNLEGN 170
>12_02_0614 - 21172290-21172480,21174927-21175164
Length = 142
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 629 PMQESLAPEHSGELF--RDALEQLLDGGGISNEGGG 730
P +P H GE + RD E+L GG GGG
Sbjct: 91 PQTLEKSPPHQGERYSNRDPAEELASGGSAGAVGGG 126
>04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280
Length = 434
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 561 ETRSFMLLSASVNSISSMPSPVYQCKKALRLNIAVNCSEMR 683
E RS LL A N + +PS + + LN++ N S+++
Sbjct: 264 EMRSLYLLDAHFNELCGLPSAIGKLSSLEILNLSSNFSDLK 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,406,954
Number of Sequences: 37544
Number of extensions: 352036
Number of successful extensions: 1286
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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