Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a07
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 174 7e-44
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 174 7e-44
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 173 9e-44
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 173 9e-44
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 173 9e-44
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 173 1e-43
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 117 8e-27
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 117 8e-27
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 69 3e-12
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 66 4e-11
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 65 5e-11
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 65 5e-11
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 65 5e-11
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 65 5e-11
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 65 5e-11
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 65 5e-11
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 65 6e-11
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 65 6e-11
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 64 1e-10
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 64 1e-10
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 64 1e-10
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 64 1e-10
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 62 4e-10
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 28 6.6
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 28 6.6
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 174 bits (423), Expect = 7e-44
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRGLKMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDL+SEYQQY
Sbjct: 405 EMEFTEAESNMNDLISEYQQY 425
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRGLKMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDL+SEYQQY
Sbjct: 405 EMEFTEAESNMNDLISEYQQY 425
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 173 bits (422), Expect = 9e-44
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 173 bits (422), Expect = 9e-44
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 173 bits (422), Expect = 9e-44
Identities = 80/81 (98%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 173 bits (421), Expect = 1e-43
Identities = 79/81 (97%), Positives = 81/81 (100%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
IPNNVKTAVCDIPPRG+KMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 404
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
EMEFTEAESNMNDLVSEYQQY
Sbjct: 405 EMEFTEAESNMNDLVSEYQQY 425
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 117 bits (282), Expect = 8e-27
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
+P + T VCDIP RGLK +ATFI NSTAIQE KRIS+QF +FRRKAFLHWYT M+
Sbjct: 343 LPKSTNTDVCDIPSRGLKTSATFIANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---ME 399
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
E EFT+AE+ +NDL+SE+QQY
Sbjct: 400 ESEFTDAENKVNDLISEFQQY 420
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 117 bits (282), Expect = 8e-27
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = -3
Query: 787 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 608
+P + T VCDIP RGLK +ATFI NSTAIQE KRIS+QF +FRRKAFLHWYT M+
Sbjct: 343 LPKSTNTDVCDIPSRGLKTSATFIANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---ME 399
Query: 607 EMEFTEAESNMNDLVSEYQQY 545
E EFT+AE+ +NDL+SE+QQY
Sbjct: 400 ESEFTDAENKVNDLISEFQQY 420
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
L+ A + N+TAIQE + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L
Sbjct: 371 LQRAVCMLSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
Query: 559 EYQQ 548
+Y++
Sbjct: 431 DYEE 434
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 65.7 bits (153), Expect = 4e-11
Identities = 26/64 (40%), Positives = 43/64 (67%)
Frame = -3
Query: 739 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 560
L+ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 376 LQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 435
Query: 559 EYQQ 548
+Y++
Sbjct: 436 DYEE 439
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 65.3 bits (152), Expect = 5e-11
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431
Query: 550 Q 548
+
Sbjct: 432 E 432
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = -3
Query: 718 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 548
I N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++
Sbjct: 384 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 440
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = -3
Query: 718 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 548
I N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++
Sbjct: 356 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 412
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E ++R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 369 AVCMLSNTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 428
Query: 550 Q 548
+
Sbjct: 429 E 429
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 550 Q 548
+
Sbjct: 434 E 434
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 373 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 432
Query: 550 Q 548
+
Sbjct: 433 E 433
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 550 Q 548
+
Sbjct: 434 E 434
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/61 (40%), Positives = 41/61 (67%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433
Query: 550 Q 548
+
Sbjct: 434 E 434
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = -3
Query: 718 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 548
+ ++TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 13 LSDTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 69
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 60.5 bits (140), Expect = 1e-09
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = -3
Query: 730 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 551
A + N+TAI E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ L +Y
Sbjct: 377 AVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYA 436
Query: 550 Q 548
+
Sbjct: 437 E 437
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 119 YLRCNFSSSFCNQCEELLAFSNE 51
YLRC++ +S QC E FSN+
Sbjct: 1126 YLRCSYGASKLQQCSEDRVFSND 1148
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -3
Query: 760 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 605
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 604 MEFTEAESNMNDLVSEY 554
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -3
Query: 760 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 605
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 604 MEFTEAESNMNDLVSEY 554
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -3
Query: 760 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 605
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 604 MEFTEAESNMNDLVSEY 554
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,372,153
Number of Sequences: 27780
Number of extensions: 281538
Number of successful extensions: 877
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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