Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a07
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 593  GELHLVHALAGVPMQESLAPEHSGELFRDALEQLLDG 703
            G++HL  A+     Q+   P H G +  + L ++ DG
Sbjct: 910  GQIHLTVAVVQYKTQDGFGPIHYG-VCSNYLREISDG 945


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 476 SPFTRRSRLYIK*PPFHLSPFERSTLYF 393
           SP T  S  Y+   PF  S +E + + +
Sbjct: 269 SPLTSHSLYYVNMEPFMKSQYEENNIEY 296


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 386 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 282
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 386 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 282
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 386 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 282
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 386 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 282
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 585 SASVNSISSMPSPVYQCKKALR-LNIAVN 668
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 415 SRDPLSTFAFRIYIVTSIV 359
           SRD LS+ AFR++  T  +
Sbjct: 304 SRDFLSSLAFRVFQSTQYI 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,124
Number of Sequences: 438
Number of extensions: 3786
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)