Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a06
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    87   2e-18
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   5.9  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
 Frame = -1

Query: 856  GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
            G   + A+VG+ VF QYWYWFPL H +SL+F+PT +I L+ +L  P+    SN +P L+A
Sbjct: 736  GSLKLSAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRPKLFA 795

Query: 676  YPAPLXXXXXXXXXRVTTAVLSI---AAAKARRRAHGTDGXXXXXXXXXXSKMEVDEEEK 506
            YP            +V TAVLS    A A+A+R                  K   +E+E 
Sbjct: 796  YPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAEREKASKGSNDDEMKIDKKTTEEKEA 855

Query: 505  KP-----SKSPNITVHSKS 464
             P      KS +I+++  S
Sbjct: 856  TPMEMDEEKSQDISINGNS 874


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 787 AHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSL 683
           AHC ++      +I L+S   +   E++ NSKP+L
Sbjct: 105 AHCQNMCLYGDELIVLSSKKNLEIYEIQKNSKPNL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,320
Number of Sequences: 5004
Number of extensions: 52526
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)