Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a06
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...   110   2e-24
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...   101   7e-22
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    33   0.22 

>04_04_1094 - 30832987-30833316,30833530-30834273,30834484-30834742,
            30834821-30835041,30835127-30835375,30835460-30835595,
            30835864-30836207,30836589-30836758,30837080-30837185,
            30837267-30837330,30838462-30838616
          Length = 925

 Score =  110 bits (264), Expect = 2e-24
 Identities = 67/198 (33%), Positives = 100/198 (50%)
 Frame = -1

Query: 853  HXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYAY 674
            H  + AVVG+ VF+Q+WYW+PL + +SLAF+PT  I LNSDLK+P+ E  S++KPSL+ Y
Sbjct: 690  HDKLTAVVGLAVFSQFWYWYPLLYFISLAFSPTAFIGLNSDLKVPKFEFLSHAKPSLFEY 749

Query: 673  PAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSKMEVDEEEKKPSK 494
            P P          ++ TA+LS   AKA+ RA                K + + +  +   
Sbjct: 750  PKPTTQQTTTSAVKLPTAILS-TYAKAKSRA----------------KKDAESKANQEKA 792

Query: 493  SPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSNPARVMRQQLKNLTIV 314
            + + +  S S                           PTF+IL+NPARV+  Q K +  +
Sbjct: 793  TEDASGSSSSKATKTQEKDADAMQVDNAAEKKAPEPEPTFQILTNPARVIPTQEKFIKFI 852

Query: 313  EGSGFTPLKDITIGGIVM 260
            EGS + P+K    G I++
Sbjct: 853  EGSRYVPVKPAPSGFILL 870


>08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,
            7586887-7587055,7587185-7587319,7587409-7587728,
            7587992-7588127,7588224-7588472,7588567-7588787,
            7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score =  101 bits (242), Expect = 7e-22
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = -1

Query: 853  HXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYAY 674
            H  + AVVG+ VFTQ+WYW+PL + +SLAF+PT  I LNSDLK+P+ E  SN+KPSL+ Y
Sbjct: 764  HDKLTAVVGLAVFTQFWYWYPLTYFISLAFSPTAFIGLNSDLKVPKFEFLSNTKPSLFDY 823

Query: 673  PAPLXXXXXXXXXRVTTAVLSIAAAKARRRA 581
            P P          ++ TA+LS   AKA+ RA
Sbjct: 824  PKPTTQQTTTASVKLPTAILS-TYAKAKSRA 853



 Score = 36.3 bits (80), Expect = 0.031
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -1

Query: 379  TFEILSNPARVMRQQLKNLTIVEGSGFTPLKDITIGGIVML 257
            TF+IL+NPARV+  Q K +  +EG  + P+K +   G V+L
Sbjct: 893  TFQILTNPARVVPAQEKFIKFLEGGRYEPVK-LAPSGFVLL 932


>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
            3400345-3400610,3400793-3400864,3401023-3401098,
            3401241-3401339,3401432-3401586,3401679-3401783,
            3401880-3401966,3402459-3402543,3402626-3402734,
            3403468-3403544,3403635-3403715,3404137-3404328,
            3404415-3404528,3404650-3404742,3404864-3404990,
            3405075-3405151,3405455-3405502,3405588-3405657,
            3405737-3405810,3405895-3406005,3406222-3406300,
            3406936-3408320
          Length = 1293

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 811  QYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNS 695
            Q WYW+PL+H     FT   I+  +  +++PQLE+   S
Sbjct: 1131 QQWYWWPLSH-FQEPFTFLDIVFSHGKVRIPQLEVSDAS 1168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,143
Number of Sequences: 37544
Number of extensions: 337676
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)