Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a06
(856 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001598-1|AAN71353.1| 1020|Drosophila melanogaster RE29621p pro... 183 3e-46
AY069503-1|AAL39648.1| 630|Drosophila melanogaster LD22648p pro... 183 3e-46
AF312231-1|AAG33625.1| 946|Drosophila melanogaster proteosome s... 183 3e-46
AF145303-1|AAF08384.1| 1020|Drosophila melanogaster 26S proteaso... 183 3e-46
AE014297-4344|AAF56868.1| 1020|Drosophila melanogaster CG11888-P... 183 3e-46
>BT001598-1|AAN71353.1| 1020|Drosophila melanogaster RE29621p protein.
Length = 1020
Score = 183 bits (445), Expect = 3e-46
Identities = 108/229 (47%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Frame = -1
Query: 856 GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
GH N+ AVVGML FTQYWYWFPLAH LSLAFTPTC+I LNSDLKMP++E KS +KPSLYA
Sbjct: 769 GHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYA 828
Query: 676 YPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSK----MEVDEE- 512
YPAPL +V TAVLSIAA + +RR + SK ++ DEE
Sbjct: 829 YPAPLEEKKSEEREKVATAVLSIAA-RQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEA 887
Query: 511 ---------EKKPSKSPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSN 359
EK K + PT EIL N
Sbjct: 888 KADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQN 947
Query: 358 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE-QVLVEPV 215
PARV+RQQLK L++++G + PLKD+TIGGI++ HTG+ E Q LVEPV
Sbjct: 948 PARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPV 996
>AY069503-1|AAL39648.1| 630|Drosophila melanogaster LD22648p protein.
Length = 630
Score = 183 bits (445), Expect = 3e-46
Identities = 108/229 (47%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Frame = -1
Query: 856 GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
GH N+ AVVGML FTQYWYWFPLAH LSLAFTPTC+I LNSDLKMP++E KS +KPSLYA
Sbjct: 379 GHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYA 438
Query: 676 YPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSK----MEVDEE- 512
YPAPL +V TAVLSIAA + +RR + SK ++ DEE
Sbjct: 439 YPAPLEEKKSEEREKVATAVLSIAA-RQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEA 497
Query: 511 ---------EKKPSKSPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSN 359
EK K + PT EIL N
Sbjct: 498 KADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQN 557
Query: 358 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE-QVLVEPV 215
PARV+RQQLK L++++G + PLKD+TIGGI++ HTG+ E Q LVEPV
Sbjct: 558 PARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPV 606
>AF312231-1|AAG33625.1| 946|Drosophila melanogaster proteosome
subunit RPN2 protein.
Length = 946
Score = 183 bits (445), Expect = 3e-46
Identities = 108/229 (47%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Frame = -1
Query: 856 GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
GH N+ AVVGML FTQYWYWFPLAH LSLAFTPTC+I LNSDLKMP++E KS +KPSLYA
Sbjct: 695 GHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYA 754
Query: 676 YPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSK----MEVDEE- 512
YPAPL +V TAVLSIAA + +RR + SK ++ DEE
Sbjct: 755 YPAPLEEKKSEEREKVATAVLSIAA-RQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEA 813
Query: 511 ---------EKKPSKSPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSN 359
EK K + PT EIL N
Sbjct: 814 KADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQN 873
Query: 358 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE-QVLVEPV 215
PARV+RQQLK L++++G + PLKD+TIGGI++ HTG+ E Q LVEPV
Sbjct: 874 PARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPV 922
>AF145303-1|AAF08384.1| 1020|Drosophila melanogaster 26S proteasome
regulatory complexsubunit p110 protein.
Length = 1020
Score = 183 bits (445), Expect = 3e-46
Identities = 108/229 (47%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Frame = -1
Query: 856 GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
GH N+ AVVGML FTQYWYWFPLAH LSLAFTPTC+I LNSDLKMP++E KS +KPSLYA
Sbjct: 769 GHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYA 828
Query: 676 YPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSK----MEVDEE- 512
YPAPL +V TAVLSIAA + +RR + SK ++ DEE
Sbjct: 829 YPAPLEEKKSEEREKVATAVLSIAA-RQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEA 887
Query: 511 ---------EKKPSKSPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSN 359
EK K + PT EIL N
Sbjct: 888 KADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQN 947
Query: 358 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE-QVLVEPV 215
PARV+RQQLK L++++G + PLKD+TIGGI++ HTG+ E Q LVEPV
Sbjct: 948 PARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPV 996
>AE014297-4344|AAF56868.1| 1020|Drosophila melanogaster CG11888-PA
protein.
Length = 1020
Score = 183 bits (445), Expect = 3e-46
Identities = 108/229 (47%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Frame = -1
Query: 856 GHXNMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYA 677
GH N+ AVVGML FTQYWYWFPLAH LSLAFTPTC+I LNSDLKMP++E KS +KPSLYA
Sbjct: 769 GHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPSLYA 828
Query: 676 YPAPLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSK----MEVDEE- 512
YPAPL +V TAVLSIAA + +RR + SK ++ DEE
Sbjct: 829 YPAPLEEKKSEEREKVATAVLSIAA-RQKRRENADKKEDEKMDVDEDSKEGAAVKKDEEA 887
Query: 511 ---------EKKPSKSPNITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSN 359
EK K + PT EIL N
Sbjct: 888 KADEKMVTDEKPKKKDEKEKKKEEDKEKEAAGTSSEKDKDKEKDKKEKKEPEPTSEILQN 947
Query: 358 PARVMRQQLKNLTIVEGSGFTPLKDITIGGIVMLNHTGEGE-QVLVEPV 215
PARV+RQQLK L++++G + PLKD+TIGGI++ HTG+ E Q LVEPV
Sbjct: 948 PARVLRQQLKVLSVIDGQSYEPLKDVTIGGIIVFQHTGKAEDQELVEPV 996
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,585,549
Number of Sequences: 53049
Number of extensions: 578957
Number of successful extensions: 1471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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