Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a06
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...    62   5e-10
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical...    29   5.6  

>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 2, isoform b
            protein.
          Length = 965

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 1/212 (0%)
 Frame = -1

Query: 847  NMLAVVGMLVFTQYWYWFPLAHCLSLAFTPTCIISLNSDLKMPQLELKSNSKPSLYAYPA 668
            +M ++VGM+ F   W+W  +   ++LA  P+C++ +N +LK+P L+   ++    +AYP 
Sbjct: 735  DMGSMVGMMCFLHGWFWHSMHFFIALAAKPSCLVMMNENLKIPVLDYICHANSQKFAYPP 794

Query: 667  PLXXXXXXXXXRVTTAVLSIAAAKARRRAHGTDGXXXXXXXXXXSKMEVDEEEKKPSKSP 488
                       ++ T VLSI   K   +                 + E        + +P
Sbjct: 795  RAESKKDKDVKKIETVVLSITGKKNASK---------KLIAEEKKRREAAASASSAAAAP 845

Query: 487  NITVHSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXPTFEILSNPARVMRQQLKNLTIVEG 308
            + +  S +                                L NPARV+  Q + ++I + 
Sbjct: 846  SSSSTSGTAPAAEDEKMEVDQPGKSKKEKAPEKDTKPLHRLQNPARVIPAQRQLISISDA 905

Query: 307  SGFTPLKDITIGGIVMLNHTG-EGEQVLVEPV 215
              ++P+K +  GGI++ +    E E+ LV  V
Sbjct: 906  RAYSPMKPLYKGGIIVADRVDKEREEKLVSEV 937


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 576 ELTVRRAVSLHLQLLKWKLMRKRKNPLNPLISQFIV 469
           EL V+ AVS HLQ ++ +++ + K+ +  L  +F++
Sbjct: 152 ELEVKTAVSSHLQSIRKEMVEQEKHEIKKLYEEFLL 187


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 576 ELTVRRAVSLHLQLLKWKLMRKRKNPLNPLISQFIV 469
           EL V+ AVS HLQ ++ +++ + K+ +  L  +F++
Sbjct: 152 ELEVKTAVSSHLQSIRKEMVEQEKHEIKKLYEEFLL 187


>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
           protein C02E7.1 protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 237 NKSWLSRLPHSARRQRKRR---SLNPQSLLNIWMIDVLLSNCNCHRNRVNMCIVLNK 76
           N S+ S  P + RR  K R   + NP    +  + D+L   C C++ R+   + +N+
Sbjct: 398 NNSYNSGRPENRRRSTKTRFSITSNPAQSFDAPLSDLLSVVCVCNKARIENTVTVNR 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,152
Number of Sequences: 27780
Number of extensions: 294312
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)