Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a05
         (431 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit...   141   8e-34
CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.              141   8e-34
BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DN...   141   8e-34
BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DN...   141   8e-34
Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit...    73   4e-13
Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit...    73   4e-13
DQ100803-1|AAZ08810.1|  119|Homo sapiens immunoglobulin heavy ch...    31   2.2  
BC105054-1|AAI05055.1|  766|Homo sapiens family with sequence si...    30   3.9  
BC105052-1|AAI05053.1|  766|Homo sapiens family with sequence si...    30   3.9  
AL391645-2|CAI15441.1|  766|Homo sapiens family with sequence si...    30   3.9  
AL365402-1|CAH73887.1|  766|Homo sapiens family with sequence si...    30   3.9  
AL354771-2|CAI15426.1|  766|Homo sapiens family with sequence si...    30   3.9  
AB111893-1|BAD04066.1|  766|Homo sapiens DBCCR1-like protein.          30   3.9  
BC131726-1|AAI31727.1|  391|Homo sapiens FAM46C protein protein.       29   9.0  
BC036516-1|AAH36516.3|  391|Homo sapiens family with sequence si...    29   9.0  
AL365331-1|CAH73761.1|  391|Homo sapiens family with sequence si...    29   9.0  
AK000209-1|BAA91010.1|  391|Homo sapiens protein ( Homo sapiens ...    29   9.0  

>U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 67

 Score =  141 bits (342), Expect = 8e-34
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 34
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 33  NYSPLEK 13
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.
          Length = 67

 Score =  141 bits (342), Expect = 8e-34
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 34
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 33  NYSPLEK 13
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score =  141 bits (342), Expect = 8e-34
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 34
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 33  NYSPLEK 13
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score =  141 bits (342), Expect = 8e-34
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 34
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 33  NYSPLEK 13
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEG 118
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEG
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32


>Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 213 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEG 118
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEG
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32


>DQ100803-1|AAZ08810.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 161 GKLT*ACYRRITQKVMLWMSLD*KDTAAEECCSDTWISLKN 39
           G +T +  + I+   + W SL   DTA   C  + W+ +KN
Sbjct: 65  GHVTISADKSISTAYLQWSSLKASDTAMYYCAREQWLGIKN 105


>BC105054-1|AAI05055.1|  766|Homo sapiens family with sequence
           similarity 5, member C protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>BC105052-1|AAI05053.1|  766|Homo sapiens family with sequence
           similarity 5, member C protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>AL391645-2|CAI15441.1|  766|Homo sapiens family with sequence
           similarity 5, member C protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>AL365402-1|CAH73887.1|  766|Homo sapiens family with sequence
           similarity 5, member C protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>AL354771-2|CAI15426.1|  766|Homo sapiens family with sequence
           similarity 5, member C protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>AB111893-1|BAD04066.1|  766|Homo sapiens DBCCR1-like protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 255 PVPHHNFRL*EINKMIIPVRCFTCGKVIGNKWEAY 151
           PV  ++F   E  K+ +P++C+     +GNKW+ +
Sbjct: 587 PVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTF 621


>BC131726-1|AAI31727.1|  391|Homo sapiens FAM46C protein protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 153 YLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEK 40
           Y  LL  D+   D  ++  L+RY C R  +   D++E+
Sbjct: 247 YSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQ 284


>BC036516-1|AAH36516.3|  391|Homo sapiens family with sequence
           similarity 46, member C protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 153 YLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEK 40
           Y  LL  D+   D  ++  L+RY C R  +   D++E+
Sbjct: 247 YSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQ 284


>AL365331-1|CAH73761.1|  391|Homo sapiens family with sequence
           similarity 46, member C protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 153 YLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEK 40
           Y  LL  D+   D  ++  L+RY C R  +   D++E+
Sbjct: 247 YSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQ 284


>AK000209-1|BAA91010.1|  391|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20202 fis, clone COLF1326. ).
          Length = 391

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 153 YLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEK 40
           Y  LL  D+   D  ++  L+RY C R  +   D++E+
Sbjct: 247 YSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQ 284


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,358,502
Number of Sequences: 237096
Number of extensions: 1238347
Number of successful extensions: 2371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3430805640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)