Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a03
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 137 7e-33
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 3.8
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 3.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 3.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 3.8
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 3.8
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 28 5.0
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 28 5.0
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 5.0
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.0
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical... 27 8.7
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 137 bits (331), Expect = 7e-33
Identities = 73/174 (41%), Positives = 106/174 (60%), Gaps = 9/174 (5%)
Frame = -3
Query: 644 IIXGDEMXXDTXKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVES 471
I DE+ D+ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+D VE
Sbjct: 7 IFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVER 66
Query: 470 GVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKD 297
G+DIVLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ FK + +
Sbjct: 67 GIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVS 126
Query: 296 ILG--RFKELQFFTGESM---DCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 150
+L RFK L FF GE +G VA++EYRD DGT++P +M K + EEK
Sbjct: 127 LLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEK 180
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 309 FVHVCFKYFNLVRRLLFQFCY*FFHI 386
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 416 KKSYTLYLKDYMKKLVAKLEEK 351
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 416 KKSYTLYLKDYMKKLVAKLEEK 351
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 434 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 270
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 434 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 270
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 416 KKSYTLYLKDYMKKLVAKLEEK 351
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 524 FNPSAEEADEGTDSAVESG-VDIVLNH 447
F+PSA +ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 524 FNPSAEEADEGTDSAVESG-VDIVLNH 447
F+PSA +ADE D A E G VD L H
Sbjct: 1236 FSPSASQADETGDRAPERGFVDTALAH 1262
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 419 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 276
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 357 FQFCY*FFHIVFEVQCVGFLVTEGVCF 437
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = -3
Query: 629 EMXXDTXKMKLVDEVIYEVTG-----RLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGV 465
E+ T +K+ E +++ G RL+ +E S D+ +
Sbjct: 343 ELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQRESNASFDDKNQKGGDKLE 402
Query: 464 DIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVE 333
I L + L+ T D++ Y L+ M++ ++K+E+ A QVE
Sbjct: 403 GIKLEYTLLLTSQLEDQRKYFEGLRHDMEQTMSKMEKTAYAQVE 446
>AC090999-25|AAK26157.2| 921|Caenorhabditis elegans Hypothetical
protein Y82E9BR.18 protein.
Length = 921
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = -3
Query: 542 DIQIEGFNPSAEEADEGTDSAVESG-VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLV- 369
DI+++ PS EEA+E T +E G + V N + + +K+ LYL++ +K+ +
Sbjct: 673 DIEVKIARPSGEEAEEMT--LIEVGPKNPVKNSQNAQKLPKNAEKTTQLYLEEKLKEQLG 730
Query: 368 ---AKLEEKAPDQVEVFKTNMNKVMKDILGRFKEL 273
AK +++ + ++ K D L KEL
Sbjct: 731 GPSAKTQKRRQRKEKLAKMKYKDQTDDDLELHKEL 765
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,410
Number of Sequences: 27780
Number of extensions: 264837
Number of successful extensions: 760
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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