Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a01
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 203 1e-52
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 200 9e-52
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.8
09_06_0103 + 20873310-20873382,20873530-20873735 29 4.9
06_03_0543 + 21967787-21970261 29 4.9
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 6.4
06_01_1134 + 9374328-9374522,9375226-9375326,9375706-9376336,937... 28 8.5
04_04_0907 + 29304830-29305030,29305296-29305547 28 8.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 8.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 203 bits (495), Expect = 1e-52
Identities = 94/156 (60%), Positives = 118/156 (75%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAIENP D+ P+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+
Sbjct: 70 VAIENPQDIIVQS-ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL+
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQ 188
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 247
+RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 200 bits (488), Expect = 9e-52
Identities = 92/152 (60%), Positives = 115/152 (75%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAIENP D+ P+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+
Sbjct: 70 VAIENPQDIIVQS-ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL 128
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL+
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 259
+RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 139 TRCSSCFWSTPCSRRMVCPGTR*VEHN 59
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 139 TRCSSCFWSTPCSRRMVCPGTR 74
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -2
Query: 640 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 533
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 390 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 301
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 139 TRCSSCFWSTPCSRRMVCPGTR*VEHN 59
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>06_01_1134 +
9374328-9374522,9375226-9375326,9375706-9376336,
9376426-9376599,9376739-9376804,9376887-9376955,
9377054-9377125,9377207-9377398,9378114-9378200
Length = 528
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 711 AIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRF 598
+I NP D F +I AP G + K H + G F
Sbjct: 472 SIVNPTDAFGRVIHAPLGTNSAFKEPKHQMPNNLNGEF 509
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 528 PAQDHQPITE-ASHVNIPVIALCNTDSPLRFVDIAIPCNT 412
P D + E A+ NIP+I L + D P +IA C T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 289 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 405
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,413,694
Number of Sequences: 37544
Number of extensions: 405871
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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