Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a01
(716 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M90422-1|AAA28741.1| 270|Drosophila melanogaster p40 protein. 251 8e-67
M77133-1|AAA28667.1| 253|Drosophila melanogaster laminin recept... 251 8e-67
BT029094-1|ABJ17027.1| 270|Drosophila melanogaster IP12946p pro... 251 8e-67
AY118899-1|AAM50759.1| 270|Drosophila melanogaster LD09376p pro... 251 8e-67
AL031027-8|CAA19839.1| 270|Drosophila melanogaster EG:80H7.6,FB... 251 8e-67
AE014298-225|AAN09049.1| 270|Drosophila melanogaster CG14792-PB... 251 8e-67
AE014298-224|AAF45638.2| 270|Drosophila melanogaster CG14792-PA... 251 8e-67
AE014298-223|AAN09050.2| 313|Drosophila melanogaster CG14792-PD... 251 8e-67
AY070554-1|AAL48025.1| 771|Drosophila melanogaster LD30968p pro... 31 1.2
AE014297-1946|AAF55136.1| 1332|Drosophila melanogaster CG6752-PA... 31 1.2
AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB... 31 1.6
AY094960-1|AAM11313.1| 964|Drosophila melanogaster SD03277p pro... 31 2.1
AY051776-1|AAK93200.1| 1022|Drosophila melanogaster LD30146p pro... 30 3.6
AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome r... 30 3.6
AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,... 30 3.6
AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,... 30 3.6
AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,... 30 3.6
AE014297-1911|AAF55107.2| 885|Drosophila melanogaster CG7292-PA... 29 6.3
AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-P... 29 6.3
AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-P... 29 6.3
>M90422-1|AAA28741.1| 270|Drosophila melanogaster p40 protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>M77133-1|AAA28667.1| 253|Drosophila melanogaster laminin receptor
protein.
Length = 253
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 49 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 107
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 108 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 167
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 168 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 202
>BT029094-1|ABJ17027.1| 270|Drosophila melanogaster IP12946p
protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>AY118899-1|AAM50759.1| 270|Drosophila melanogaster LD09376p
protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>AL031027-8|CAA19839.1| 270|Drosophila melanogaster
EG:80H7.6,FBgn0003517;sta protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>AE014298-225|AAN09049.1| 270|Drosophila melanogaster CG14792-PB,
isoform B protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>AE014298-224|AAF45638.2| 270|Drosophila melanogaster CG14792-PA,
isoform A protein.
Length = 270
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 66 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 125 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 184
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 185 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 219
>AE014298-223|AAN09050.2| 313|Drosophila melanogaster CG14792-PD,
isoform D protein.
Length = 313
Score = 251 bits (614), Expect = 8e-67
Identities = 117/155 (75%), Positives = 131/155 (84%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
VAI+NP+D+F + + P GQRAVLKFA +T TPIAGRFTPGAFTNQIQ AFREPRLL+V
Sbjct: 109 VAIDNPSDIFV-ISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVV 167
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQPI EAS+VNIPVIA NTDSPLR++DIAIPCN KS+HSIGLMWWLLAREVLR
Sbjct: 168 TDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLR 227
Query: 354 LRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKE 250
LRG + R W VVVDLFFYRDPEE+EK+E AKE
Sbjct: 228 LRGTISRSVEWPVVVDLFFYRDPEEAEKEEAAAKE 262
>AY070554-1|AAL48025.1| 771|Drosophila melanogaster LD30968p
protein.
Length = 771
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -2
Query: 526 CTRPSTHY*SFT-CQH-SC-DCFVQHRLPTKICGHC 428
C +P T FT C+H SC DC +QH + +K+C +C
Sbjct: 708 CAKPITAV--FTPCKHQSCSDCIMQHMMNSKVCFYC 741
>AE014297-1946|AAF55136.1| 1332|Drosophila melanogaster CG6752-PA
protein.
Length = 1332
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -2
Query: 526 CTRPSTHY*SFT-CQH-SC-DCFVQHRLPTKICGHC 428
C +P T FT C+H SC DC +QH + +K+C +C
Sbjct: 1269 CAKPITAV--FTPCKHQSCSDCIMQHMMNSKVCFYC 1302
>AE014298-2197|AAF48495.2| 5146|Drosophila melanogaster CG8184-PB
protein.
Length = 5146
Score = 31.1 bits (67), Expect = 1.6
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGR-FTPGAFTNQIQAAFREPRL-- 544
VA+E D F L+ P + L A+H GA+ +GR F P A ++AA +
Sbjct: 4600 VALEESKDEFAVLVLQPTVEAFFLIHASHRGASKKSGRSFMPNAAGFGLRAAAGAGAIGG 4659
Query: 543 LIVLDP-AQDHQP-ITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGL 388
L P AQ++ P + + S N P A + + ++ P T S S +
Sbjct: 4660 LGAAAPSAQEYSPFMDDVSSANTPSSASFDDEPRMQDASTNTPLVTNPSTSTAM 4713
>AY094960-1|AAM11313.1| 964|Drosophila melanogaster SD03277p
protein.
Length = 964
Score = 30.7 bits (66), Expect = 2.1
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = -3
Query: 714 VAIENPADVFRHLITAPFGQRAVLKFAAHTGATPIAGR-FTPGAFTNQIQAAFREPRL-- 544
VA+E D F L+ P + L A+H GA+ +GR F P A ++AA +
Sbjct: 418 VALEESKDEFAVLVLQPTVEAFFLIHASHRGASKKSGRSFMPNAAGFGLRAAAGAGAIGG 477
Query: 543 LIVLDP-AQDHQP-ITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGL 388
L P AQ++ P + + S N P A + + ++ P T S S +
Sbjct: 478 LGAAAPSAQEYSPFMDDISSANTPSSASFDDEPRMQDASTNTPLVTNPSTSTAM 531
>AY051776-1|AAK93200.1| 1022|Drosophila melanogaster LD30146p
protein.
Length = 1022
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 75 LVPGQTILLEQGVLQKQELQRVQQ 146
L PGQTI+ ++ V Q Q LQ VQQ
Sbjct: 695 LSPGQTIVTQRNVPQSQALQMVQQ 718
>AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome
remodeling factor largesubunit NURF301 protein.
Length = 2669
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 75 LVPGQTILLEQGVLQKQELQRVQQ 146
L PGQTI+ ++ V Q Q LQ VQQ
Sbjct: 1832 LSPGQTIVTQRNVPQSQALQMVQQ 1855
>AE014296-62|AAS64922.1| 2159|Drosophila melanogaster CG32346-PC,
isoform C protein.
Length = 2159
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 75 LVPGQTILLEQGVLQKQELQRVQQ 146
L PGQTI+ ++ V Q Q LQ VQQ
Sbjct: 1832 LSPGQTIVTQRNVPQSQALQMVQQ 1855
>AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,
isoform A protein.
Length = 2669
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 75 LVPGQTILLEQGVLQKQELQRVQQ 146
L PGQTI+ ++ V Q Q LQ VQQ
Sbjct: 1832 LSPGQTIVTQRNVPQSQALQMVQQ 1855
>AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,
isoform B protein.
Length = 2649
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 75 LVPGQTILLEQGVLQKQELQRVQQ 146
L PGQTI+ ++ V Q Q LQ VQQ
Sbjct: 1812 LSPGQTIVTQRNVPQSQALQMVQQ 1835
>AE014297-1911|AAF55107.2| 885|Drosophila melanogaster CG7292-PA
protein.
Length = 885
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 520 LCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTERGRDE 678
+C+ +YN+ E LDLV K+ + NR+ +RG ++ T R DE
Sbjct: 458 VCKKRYNKPHIGPESHLDLVRKTK--RSFDNRQLYALRGIFEWRDATARSEDE 508
>AE014134-1162|AAN10598.1| 2922|Drosophila melanogaster CG11321-PB,
isoform B protein.
Length = 2922
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 142 CTRCSSCFWSTPCSRRMVCP 83
C +CSS F++ P +R++CP
Sbjct: 2627 CIQCSSGFFARPKQKRLICP 2646
>AE014134-1161|AAF52435.2| 2594|Drosophila melanogaster CG11321-PA,
isoform A protein.
Length = 2594
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 142 CTRCSSCFWSTPCSRRMVCP 83
C +CSS F++ P +R++CP
Sbjct: 2299 CIQCSSGFFARPKQKRLICP 2318
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,936,999
Number of Sequences: 53049
Number of extensions: 692308
Number of successful extensions: 2003
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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