Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a01
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 195 3e-50
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.1
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.1
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.1
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.1
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 30 1.4
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 30 1.4
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 30 1.4
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 30 1.4
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 29 2.5
U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical pr... 28 7.7
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 7.7
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 7.7
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 7.7
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 195 bits (475), Expect = 3e-50
Identities = 91/158 (57%), Positives = 119/158 (75%), Gaps = 6/158 (3%)
Frame = -3
Query: 711 AIENPADVFRHLITA-PFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV 535
A+ENPADV +++A P+ QRA+LKFAAHTGAT I GRF+PG TNQIQ F+EPRLL++
Sbjct: 67 AVENPADVV--VVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVI 124
Query: 534 LDPAQDHQPITEASHVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 355
DP DHQ +TEAS+V +PVI+ NT+SPL+ +DI +PCN K SIGLMWW+LARE+L
Sbjct: 125 SDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILI 184
Query: 354 LRGVLPRDQRW-----DVVVDLFFYRDPEESEKDEQQA 256
LRG + R + +++ DL+FYRDP E+EK+E A
Sbjct: 185 LRGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3127 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3180
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3025 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3078
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3026 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3079
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3108 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3161
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 660 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITE 499
G L+ A H G+F GA +I A + RL ++ P++ Q +TE
Sbjct: 3139 GDLLTLRDALHQNKIDSNGKFVEGANRLKISDAVKSGRLTVIASPSEAVQAVTE 3192
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 599 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 447
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3338 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3388
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 599 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 447
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 599 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 447
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 599 SHQVL-LLTRSKLHSVNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTPH 447
SH+V+ + + +LHS+NL + LYW L + + + S F+ +LC H
Sbjct: 3349 SHEVMNRVIKKQLHSLNLFNWLYW-LPQLVTDVRYKPNSNFVLILCKMAAAH 3399
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -3
Query: 699 PADVFRHLITAPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP-- 526
P DV P A + A GATP A T A T+Q Q + P+ +V P
Sbjct: 85 PRDVTSAHAPPPPASSAPIVGAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPPSA 144
Query: 525 AQDHQPITEASHVN 484
A QP++ S +
Sbjct: 145 ATQQQPVSVTSQAS 158
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 145 CCTRCSSCFWSTPCSRRMVCP 83
CCT CF ST CS VCP
Sbjct: 53 CCTN-EECFMSTECSYSAVCP 72
>U39742-3|AAY86225.1| 188|Caenorhabditis elegans Hypothetical
protein C25F6.8 protein.
Length = 188
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 492 HVNIPVIAL-CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 358
H N + A CNTD+ R + CNT + +G+ + L+AR ++
Sbjct: 39 HQNTRLFAKRCNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81
>Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical
protein BE10.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 380 HHIKPIEWEDLVLHGIAMSTNLSGES---VLHKAITGMLTCEA 499
HH + +E D +LH I +S S +S V+ K I ++C++
Sbjct: 202 HHFEHLEVSDTLLHRIVLSLADSSQSNLAVIDKYINSRISCDS 244
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 96 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 191
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 414 TKSSHSIGLMWWLLA 370
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 96 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 191
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,723
Number of Sequences: 27780
Number of extensions: 339608
Number of successful extensions: 966
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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