Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17p14
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 33 0.37
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2) 30 2.6
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 30 2.6
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38) 29 3.4
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11) 29 4.5
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07) 29 4.5
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_30810| Best HMM Match : JmjC (HMM E-Value=0.0021) 28 7.9
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 7.9
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 28 7.9
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 33.1 bits (72), Expect = 0.28
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 1/190 (0%)
Frame = -1
Query: 613 IAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRM 434
+AK+ ++ ++ D + N + E+ + AE + EN +E L +
Sbjct: 623 VAKMKEVMER---KGGDANKVNARVAELEKELKEKTKSAEKLVKASENREKEIDALKRAL 679
Query: 433 ADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDV-IFSSDYV 257
D QD + + L + E L Q S SL+R G+ V I D +
Sbjct: 680 QD--QDQVMEEQQDALTERQLEIESLTEELRTLTDQNTST-YSLRREGTLSVYIEEKDQL 736
Query: 256 PNSMNVLNKVKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ 77
++ L K + I +K +++ + DY E+ ++ + IA+M + + +
Sbjct: 737 QRELDALRKTEAGIEVSKVTTTSSQVEISRDYEIEKCEILVKLEKKEGVIAKMKTQQKSS 796
Query: 76 *KFLYVVKRL 47
KRL
Sbjct: 797 DSAAAKEKRL 806
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +3
Query: 387 SCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKS 566
SC +L ++ C +S L+ C VS R SCR +S + ++ L +S R+ S +
Sbjct: 254 SCAVLYRVVSCCVVSCRVLSCCIVSCRVV--SCRVLSCCIVSCLVVLYRVVSCRVVSCR- 310
Query: 567 ALATVNFCVRSSILAITSFVS 629
++ C+ S ++ + VS
Sbjct: 311 ---VLSCCIVSCLVVLYRVVS 328
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 387 SCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKS 566
SC +L I SC + R+ SC V SCR +S + ++ +S R+ S +
Sbjct: 308 SCRVLSCCIVSCLVVLYRVVSCRV------VSCRVLSCCIVSCLVLSCCVVSCRVVSCRV 361
Query: 567 ALATVNFC 590
L V C
Sbjct: 362 VLYRVVSC 369
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 32.3 bits (70), Expect = 0.49
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +3
Query: 408 AITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNF 587
A TS A ++ +AS A + A S ++SAS + I S S +SAK++ A+ +
Sbjct: 29 AKTSSASASSNIASSASASSASMSSSSSLSASASSNIASSDIASSANASSAKTSSASASS 88
Query: 588 CVRSSILAITSFVSISTAGAYLPVHST*GMTSSKSHSCNS 707
+ SS A S S+S+A + S+ +S + S N+
Sbjct: 89 NIASS--ASASSASMSSASSLSASASSNIASSDIASSANA 126
Score = 32.3 bits (70), Expect = 0.49
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 408 AITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNF 587
A TS A ++ +AS A + A S ++SAS + I S S +SAK++ A+ +
Sbjct: 79 AKTSSASASSNIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASS 138
Query: 588 CVRSSILAITSFVSISTAGA 647
+ SS A + S + A +
Sbjct: 139 NIASSASASSDVASSAIASS 158
>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1401
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -1
Query: 607 KIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMAD 428
K +T+KLT A++ + L+ ++ R+D++ E RE L +R+AD
Sbjct: 1147 KTRGMTEKLTQITAEVDLKKKELLEAEQSLVKVRKDSDGVMTSVEERTRELKSLESRLAD 1206
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 529 ANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLC 383
A+ ++V R DAE + RR +N I ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406
>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
Length = 208
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 628 DTNDVIAKIDD-LTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETA 452
D + V +D+ K VAN DLA+ + AN++ R D + + R E
Sbjct: 120 DISQVANDLDNNRPHKSRVAN-DLADNRSDISQVANDLADNRPDISQVSNNLADNRLEEL 178
Query: 451 QLANRMADIAQDVIAKPSNPQLCHSLAVC 365
Q+AN + D D I+ NP L C
Sbjct: 179 QVANNLTDNRPD-ISLHVNPALSEVQPSC 206
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -1
Query: 628 DTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQ 449
D + V + D ++ +LA + AN++ R D D + R +T+Q
Sbjct: 22 DISQVANNLADNRLDISQVGNNLANNRLDISQVANDLADNRPDTSQVANDLADNRPDTSQ 81
Query: 448 LANRMAD 428
+AN +AD
Sbjct: 82 VANDLAD 88
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 294 NRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSC---AMSAMRLASCAVSR 464
N FRL PSDR R S P S A + + G AI C + R++ V +
Sbjct: 136 NCFRLDPSDRKYDRIYCGSACPPSKVAFILSMTKIGGFAIIPCRNKLLKIERISPTRVKQ 195
Query: 465 RAFSQSCRA 491
S+ C A
Sbjct: 196 SVLSEVCFA 204
>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 634 EMDTNDVIAKIDDLTQKL---TVANADLAEANRSLILFANEMIVARRDAETARQDCENAR 464
+ + +D+ K+DDL QKL DL +R + + E+ + R E R + ++
Sbjct: 93 DAEVSDLKIKLDDLQQKLKQEKQIQEDLQGHSRQVKMLTKELEILRAHEEKTRSELQSTE 152
Query: 463 RETAQLANRM 434
++L ++
Sbjct: 153 GNASELEKKL 162
>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
Length = 510
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -1
Query: 565 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLAN 440
D+ E+ RS I LFA++ I R +R+DCE RR+ ++LA+
Sbjct: 261 DIQESVRSEIRLFADDCICYR--TIRSREDCEELRRDISRLAS 301
>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
Length = 266
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = -1
Query: 634 EMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRET 455
E ND+ A++ L QKL +L + + L+ +E + + R D + R++
Sbjct: 180 EQARNDLQAQVHSLQQKLNSLEDELDRSQKERALYESEANDLNQTSMKHRDDATSTRKQV 239
Query: 454 AQLANRMADIAQDVIAK 404
+L + + + K
Sbjct: 240 MELQGVIDSLRSSIAEK 256
>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
Length = 1213
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 387 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 497
SC LLGL ++ SAM + C +S R Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502
>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 577 VANADLAEANRSLILFANEMIVARRDAETARQDCE-NARRETAQLANRMADIAQDVIAKP 401
V + D RS AN I ++RD T++ DC+ +A + N ++ + +I K
Sbjct: 45 VGSTDRLPFARSTSSLANNTIPSKRDKRTSKHDCDGSANNKRTNKHNDGSNNKRTIITKH 104
Query: 400 SN 395
N
Sbjct: 105 DN 106
>SB_30810| Best HMM Match : JmjC (HMM E-Value=0.0021)
Length = 546
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 152 GANERD-RLHYDRPTNCAHEQFAQRAIKIFICRQAFKHW 39
G N R ++ + P NC + F+ R IF+ QAFK W
Sbjct: 178 GLNARQFSIYSNNPVNCLPKCFSIRK-GIFVVSQAFKEW 215
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +3
Query: 423 AMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVRSS 602
A ++ +AS A + A S ++SAS + I S S +SAK++ A+ + + SS
Sbjct: 340 ASASSAIASSASASSASMSSASSLSASASSNIASSDIASSANASSAKTSSASASSNIASS 399
Query: 603 ILAITSFVSISTAGA 647
A + S + A +
Sbjct: 400 ASASSDVASSAIASS 414
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 589 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARR 461
+K+ A A L EA + L + I R+D ++ +DCEN R
Sbjct: 5 EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 28.3 bits (60), Expect = 7.9
Identities = 25/84 (29%), Positives = 39/84 (46%)
Frame = +3
Query: 339 NANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATI 518
+ANS T+ TA +C L A S +A + + C++S A SA+ A
Sbjct: 553 SANSTSCTNTTAAPSSNCSLATNATASANTTAAQNSDCSLSTNA------TASANTTAAP 606
Query: 519 ISLANKMSDRLASAKSALATVNFC 590
S + ++ ASA ++ AT N C
Sbjct: 607 NSNCSLSTNATASANTSEATGNSC 630
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,310,969
Number of Sequences: 59808
Number of extensions: 551585
Number of successful extensions: 1479
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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