Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p12
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476...    31   1.0  
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831           30   1.8  
09_02_0136 + 4747985-4748419                                           28   7.1  
07_03_0132 - 14011468-14012124                                         28   7.1  
07_03_0131 - 14004278-14004712                                         28   7.1  
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    28   9.4  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    28   9.4  

>07_01_0636 +
           4761858-4762421,4763596-4763819,4763961-4764309,
           4764648-4765331
          Length = 606

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +2

Query: 530 FYRAASSDSTSSVKNRKIELSAVDEMLATRSPSGWRGLRLLSTGHGRELV------SGGG 691
           F+ ++SS S+SS  +  +  +A     + R PS W G      G    LV      SGGG
Sbjct: 57  FFLSSSSSSSSSSSSTLVRPAASSHAASLRKPSSWGGGNGGGGGGEHLLVTSSSFGSGGG 116

Query: 692 VRGALFPRST 721
            RG+    ST
Sbjct: 117 ARGSWSRNST 126


>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
          Length = 757

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +2

Query: 602 EMLATRSPSGWRGLRLLSTGHGRELVSGGGVRGALFPRSTLHYKP 736
           EMLA   PSG     LL+   GR    GGG RG L  + T + +P
Sbjct: 160 EMLAMLGPSGSGKTTLLTALGGRHGGGGGGGRGMLSGKITYNGQP 204


>09_02_0136 + 4747985-4748419
          Length = 144

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 542 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 691
           A+S    + + R++E +  +E    R   S  G RG R  S G G    +GGG
Sbjct: 48  ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100


>07_03_0132 - 14011468-14012124
          Length = 218

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 542 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 691
           A+S    + + R++E +  +E    R   S  G RG R  S G G    +GGG
Sbjct: 48  ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100


>07_03_0131 - 14004278-14004712
          Length = 144

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 542 ASSDSTSSVKNRKIELSAVDEMLATR---SPSGWRGLRLLSTGHGRELVSGGG 691
           A+S    + + R++E +  +E    R   S  G RG R  S G G    +GGG
Sbjct: 48  ATSTGAQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRGGHCDAGGG 100


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 613 DAVPKRLARVAAAEHRAW-SGTREWRR--CQGRVVPTVHP 723
           DA  +RLA  A  EH  W S   EW+R   Q + +P  +P
Sbjct: 333 DAAAERLAHDALLEHMKWESQIEEWQRPILQDKSLPEWYP 372


>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 760  IQTHRPVPGFVVKGGPWEQRAPDTASTHEFP-TMPG 656
            IQT    P +   G PWE   P+ + +H  P  MPG
Sbjct: 893  IQTSFVRPVYPGPGSPWENTTPNPSFSHASPRMMPG 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,537
Number of Sequences: 37544
Number of extensions: 319701
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)