Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p12
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ...    36   0.21 
BC113120-1|AAI13121.1|  589|Homo sapiens HDLBP protein protein.        36   0.21 
BC014305-1|AAH14305.2|  898|Homo sapiens HDLBP protein protein.        36   0.21 
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei...    36   0.21 
AK127833-1|BAC87153.1|  847|Homo sapiens protein ( Homo sapiens ...    36   0.21 
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.              36   0.21 
U94703-1|AAC51321.1|  372|Homo sapiens mitochondrial DNA polymer...    32   2.6  
AK097864-1|BAC05188.1|  193|Homo sapiens protein ( Homo sapiens ...    31   4.5  
BC024199-1|AAH24199.1|  503|Homo sapiens TRIM69 protein protein.       31   6.0  

>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
            binding protein protein.
          Length = 1268

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745  PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
            P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 1222 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268


>BC113120-1|AAI13121.1|  589|Homo sapiens HDLBP protein protein.
          Length = 589

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745 PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
           P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 543 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 589


>BC014305-1|AAH14305.2|  898|Homo sapiens HDLBP protein protein.
          Length = 898

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745 PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
           P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 852 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 898


>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
            binding protein (vigilin) protein.
          Length = 1268

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745  PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
            P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 1222 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268


>AK127833-1|BAC87153.1|  847|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45936 fis, clone PLACE7004103, highly  similar
           to Vigilin. ).
          Length = 847

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745 PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
           P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 801 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 847


>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
          Length = 1268

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 745  PVPGFVVKGGPW----EQRAPDTASTHEFPTMPGXXXXXXXXXAWGPRR 611
            P  GFVV+  PW     ++APD +S+ EFP+             WGP+R
Sbjct: 1222 PSRGFVVRDAPWTASSSEKAPDMSSSEEFPSF--GAQVAPKTLPWGPKR 1268


>U94703-1|AAC51321.1|  372|Homo sapiens mitochondrial DNA polymerase
           accessory subunit precursor protein.
          Length = 372

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 683 GGGVRGALFPRSTLHYKP 736
           GGGV GA+FP   LH+KP
Sbjct: 5   GGGVHGAVFPVDALHHKP 22


>AK097864-1|BAC05188.1|  193|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40545 fis, clone THYMU2001195. ).
          Length = 193

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 608 LATRSPSGWRGLRLLSTGHGRELVSGGGVRGAL-FPRSTLHYKP 736
           LA   P GW  +RLL     R L   G    AL  PR+T H++P
Sbjct: 74  LAVAGPQGWPAVRLLREAPLRGLGDPGARLSALEGPRATRHHRP 117


>BC024199-1|AAH24199.1|  503|Homo sapiens TRIM69 protein protein.
          Length = 503

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 270 GHVIFMNCLEMVNMPFDISCYSNSYLWIFYKHFCTCILNMHNNKKVLNLYLLRKK 106
           G + F N   M +    I  +SN+++   Y +FC C+ +   NK+   L++LRKK
Sbjct: 452 GQLSFYNAKTMTH----IYTFSNTFMEKLYPYFCPCLNDGGENKE--PLHILRKK 500


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,056,462
Number of Sequences: 237096
Number of extensions: 1854702
Number of successful extensions: 3578
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)