Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p12
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z83106-3|CAB05495.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.4 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 119 KYKFKTFLLLCMFNMHVQKCL*NIHKYEFE*QLMSNGILTISKQFIKITW 268
           +Y+FK  +L   F + +   L  + +  FE   M  G++ I   FI+I W
Sbjct: 148 EYRFKALILAVSFGLKMVTEL--VLRKRFEIMQMFGGLMPIQNGFIRIHW 195


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 53  QCLQKSYKNIIMXMKHYNFFLNKYKFKTFLLLCMFN--MHVQKCL*NIHKYEFE*QLMSN 226
           +C ++++  II  ++H+ + L + +F+     C FN  + V K L  ++K      L   
Sbjct: 612 RCSKENF--IICFIRHFEYLLKRQQFEIQTFQCSFNHTIEVSKTLDKVNKSIISNHLSVE 669

Query: 227 GILTISKQFIKI 262
            ++     F K+
Sbjct: 670 NLILKGGDFFKV 681


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,116
Number of Sequences: 27780
Number of extensions: 310735
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)