Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p09
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    41   2e-04
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    41   2e-04
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   3.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   4.6  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   4.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.1  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = -3

Query: 710 KIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 597
           ++P+G+LG ++   FD G++L+ TV+ + GEE  +A +
Sbjct: 115 RLPEGELGNEIEEGFDEGRDLIITVVSAMGEETALACR 152


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = -3

Query: 710 KIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 597
           ++P+G+LG ++   F+ GK+L+ TV+ + GEE  +A +
Sbjct: 115 RLPEGELGNEIEEGFEEGKDLIITVVSAMGEEIALACR 152


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 619 RSASSPSKQTQLSTNKPTQH 560
           +S SSPS+ + LST+KP  H
Sbjct: 286 KSESSPSRSSVLSTSKPEVH 305


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 559  NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 672
            ++ +V  S  + +LTA+  S+P   S+V N+S P++ S
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSS 2595



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 559  NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 672
            ++ +V  S  + + TA+  S+P   STV N+S P++ S
Sbjct: 3026 SSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSS 3063



 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 559  NAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKS 672
            ++ +V  S  + + TA+  S+P   STV N+S P++ S
Sbjct: 3410 SSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSS 3447


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 644 CTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*FFTINNSYINVKHNIVY 486
           C V+    E   +    NT  D  +N   IG     FF +N +++NVK  ++Y
Sbjct: 219 CVVINKDSEFLQMCRPINTTQD--SNEHSIGSL---FFYLNYNFVNVKRQVIY 266


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 398 PHPLTSPTRSVVSPSAP*YLTEFKGHLKFLLAKSNSHPII 279
           P   T P RSV + S P +   F  H  F+LA  ++   I
Sbjct: 267 PDASTKPARSVHAHSGPIHSVAFNPHNDFILATCSTDKTI 306


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 701  DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNF*F 534
            D +L   L T   +GK   C +      +C++A +   A +  TNS F+   +F F
Sbjct: 2869 DSNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQDQFAGEWDTNSRFLAFASFHF 2924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,750
Number of Sequences: 5004
Number of extensions: 42123
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)