Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17p09
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 34 0.13
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 33 0.22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 33 0.22
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 31 1.2
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 3.6
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 28 6.4
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 28 8.4
07_01_0200 + 1433859-1434377 28 8.4
07_01_0196 + 1400708-1401226 28 8.4
07_01_0192 + 1367558-1368076 28 8.4
07_01_0188 + 1334405-1334923 28 8.4
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 701 DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 597
D L Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 138 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 701 DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 597
D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 153 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 701 DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 597
D L TQ++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1456 DEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 701 DGDLGTQLRTDF-DSGKELLCTVLKSCGEECVIAVK 597
D L Q++ F + GK+++ TV+ + GEE + AVK
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 704 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 618
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 377 TRSVVSPSAP*YLTEFKGHLKFLLAKSNSHPIIVKQL 267
T+S+VSP Y F+G +K +L KS H QL
Sbjct: 216 TKSIVSPLPTKYSGAFRGLIKSMLRKSPEHRPSAAQL 252
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 698 GDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 591
G GTQ D +L +VLKS + CV A KA+
Sbjct: 742 GKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 568 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 654
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 568 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 654
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 568 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 654
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 568 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 654
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,709
Number of Sequences: 37544
Number of extensions: 256953
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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