Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p09
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    36   0.038
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    32   0.47 

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 710 KIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 588
           K+P+GDLG  +R   +  +  +L  V+ +CGEE ++  K +T
Sbjct: 152 KMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 710 KIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 588
           K+PD +LG Q+R  ++  +  +L  V+ + GEE ++  K +T
Sbjct: 118 KLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,240
Number of Sequences: 27780
Number of extensions: 243188
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)