Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p05
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   0.48 
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   0.63 
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   1.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   2.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   2.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   3.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   4.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    23   7.8  
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone...    23   7.8  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 0.48
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 80   SIARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLN 193
            S+ARL    H  ++++      LP+D+ K ++RA  LN
Sbjct: 2102 SLARLLAFWHVELHLVSPEQLALPDDV-KDDIRANGLN 2138


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 71  ISKSIARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLNINNE 205
           ISK +      M  H  ++G  TF LP+   K   + + L+IN +
Sbjct: 221 ISKGLGTPEQCMLLHNELIGPSTFPLPKRAKKPPRKRITLSINQQ 265


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 248 GLRANGTKTYVKEIIRCLYLNLELSVPLLK 159
           GL   G   Y+  +++CL+   +L++P+L+
Sbjct: 73  GLTNLGNTCYMNCVLQCLFACKDLTIPMLQ 102


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 131 HYTFTLPEDILKGELRALNLNINNELSP 214
           HY +   ++I+KG LR  N+     L P
Sbjct: 798 HYEWLYEDNIIKGFLRVTNIPPKEPLKP 825


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 222  VR*GDNSLFIFKFRALSSPFKIS 154
            V+  DN LFIFK+ +   P  IS
Sbjct: 1101 VKIDDNDLFIFKYESYDIPKDIS 1123


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 73  FKVNRSAISPDARAYQYVGPLYIHVARGYFKRGTESSKFKYK 198
           F  + S +SP     QYV  +     + Y+  G + S++ YK
Sbjct: 307 FVYSGSTVSPKYTIQQYVQSIGTPTMQPYWSLGFQMSRWGYK 348


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 44  VIKNQSVCFISKSIARLSPLMHGHINMLGHYTFT 145
           ++KN+      + +A ++PLM+      G  TFT
Sbjct: 886 ILKNEIAMKDDQELAAIAPLMNNFSTSSGFTTFT 919


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 131 HYTFTLPEDIL-KGELR 178
           H  F+LPEDIL K ELR
Sbjct: 7   HNIFSLPEDILAKLELR 23


>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 195

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 161 LKGELRALNLNINNELSP*RTFSFHWPSN 247
           + GE++A++  ++ ELSP      + PSN
Sbjct: 106 ISGEIKAIDQYVDKELSPMYDNYVNKPSN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,936
Number of Sequences: 5004
Number of extensions: 15033
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)