Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p05
         (249 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0206 - 2206359-2209142                                           26   4.8  
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077...    26   4.8  
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166...    26   4.8  
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285...    25   6.4  

>10_01_0206 - 2206359-2209142
          Length = 927

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 41  LVIKNQSVCFISKSIARLSPLMHGHINMLGHYTFTLPEDILK 166
           L +++  V F+ KS+ RLS L+   +++   Y   LP+ I+K
Sbjct: 611 LGLRHSKVKFLPKSVERLSNLL--TLDIFNSYIQELPQGIVK 650


>08_02_0866 +
           22006822-22006899,22006997-22007080,22007621-22007719,
           22007864-22007908,22008170-22008265,22009150-22009227,
           22009864-22009949,22010038-22010104,22010192-22010254,
           22010332-22010433,22010559-22010663,22010748-22010840,
           22011380-22011468,22012049-22012268,22012816-22012899,
           22013221-22013337,22013399-22013473,22013589-22013675,
           22013766-22013828,22014833-22014949,22015231-22015323,
           22015794-22015919,22015992-22016092,22016917-22016996,
           22017023-22017093,22017200-22017256,22017430-22017573
          Length = 839

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 8   IT*NLD*HQSVLVIKNQSVCFISKSIARLSPLMHGHINMLGH 133
           +T N D HQ  + + + S+   SK IA+ +  M G + ++ H
Sbjct: 508 LTYNFDFHQEAVEVCSTSLQNASKVIAKKATAMDGQLFLIKH 549


>04_03_0214 +
           12713865-12713973,12715780-12716011,12716556-12716635,
           12716930-12717083,12717213-12717291,12717654-12717738,
           12718420-12718466,12720123-12720281
          Length = 314

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 41  LVIKNQSVCFISKSIARLSPLMHGHINMLGHYTFT 145
           ++I N  VCF+   ++     +H   N +GH+  T
Sbjct: 112 ILINNAGVCFVPFKLSEDDIELHFATNHIGHFLLT 146


>12_01_0371 -
           2851186-2851491,2851582-2851765,2851967-2852156,
           2853375-2853613,2853862-2853947,2854720-2854827,
           2854929-2855031,2855152-2855213
          Length = 425

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 213 GDNSLFIFKFRALSSPFKISSGNVNV*W 130
           GD   F+FK    +S F+ + GN N+ W
Sbjct: 297 GDMKTFLFKLYPEASIFRPTGGNRNLQW 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,365,106
Number of Sequences: 37544
Number of extensions: 83835
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)