Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p05
         (249 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-948|AAN09184.1| 3313|Drosophila melanogaster CG14438-PB...    31   0.28 
AE014298-947|AAF46197.2| 3313|Drosophila melanogaster CG14438-PA...    31   0.28 
AE014297-876|AAF54337.1|  337|Drosophila melanogaster CG11994-PA...    28   2.0  
AY061222-1|AAL28770.1|  305|Drosophila melanogaster LD16544p pro...    26   8.0  
AE014298-1472|AAF46607.2|  459|Drosophila melanogaster CG1628-PB...    26   8.0  

>AE014298-948|AAN09184.1| 3313|Drosophila melanogaster CG14438-PB,
            isoform B protein.
          Length = 3313

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 65   CFISKSIARLSPLMHGHINMLGHYTFTLPEDILKGELRA 181
            C +     R SPL H  +    HY   LP D+LK ELRA
Sbjct: 1447 CVVCSKWVRRSPLSHYMMCHKEHYAARLPPDVLK-ELRA 1484


>AE014298-947|AAF46197.2| 3313|Drosophila melanogaster CG14438-PA,
            isoform A protein.
          Length = 3313

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 65   CFISKSIARLSPLMHGHINMLGHYTFTLPEDILKGELRA 181
            C +     R SPL H  +    HY   LP D+LK ELRA
Sbjct: 1447 CVVCSKWVRRSPLSHYMMCHKEHYAARLPPDVLK-ELRA 1484


>AE014297-876|AAF54337.1|  337|Drosophila melanogaster CG11994-PA
           protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 65  CFISKSIARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLNI 196
           C   ++ + +  ++H  ++  GH TF  PEDI  G+L+  N+ I
Sbjct: 199 CAEIENPSEVKEMLHFGMSRCGHGTFLTPEDI--GQLKQRNIAI 240


>AY061222-1|AAL28770.1|  305|Drosophila melanogaster LD16544p
           protein.
          Length = 305

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 83  IARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLN 193
           I  L  ++ G I  +  +T T P D++K  ++  NLN
Sbjct: 217 IGPLRTMIAGAIGGVCLWTSTFPADVIKSRIQVKNLN 253


>AE014298-1472|AAF46607.2|  459|Drosophila melanogaster CG1628-PB
           protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 83  IARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLN 193
           I  L  ++ G I  +  +T T P D++K  ++  NLN
Sbjct: 371 IGPLRTMIAGAIGGVCLWTSTFPADVIKSRIQVKNLN 407


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,323
Number of Sequences: 53049
Number of extensions: 152497
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 24,988,368
effective HSP length: 62
effective length of database: 21,699,330
effective search space used: 433986600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)