Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p05
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical pr...    29   0.58 
AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lecti...    26   3.1  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81537-10|CAB04382.1|  416|Caenorhabditis elegans Hypothetical p...    25   9.4  

>U88177-2|AAB42291.1|  358|Caenorhabditis elegans Hypothetical
           protein F53E10.5 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 68  FISKSIARLS-PLMHGHINMLGHYTFTLP 151
           F    IA +S PL H H + +GH+  TLP
Sbjct: 132 FNQAEIAPISVPLYHAHNSQIGHFEMTLP 160


>AC024817-24|AAF59584.3|  237|Caenorhabditis elegans C-type lectin
           protein 83 protein.
          Length = 237

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 54  INQSASFQSQSLGYLP*CTGISICWAIIHSRCQRIF 161
           +NQ  S+Q  ++GY   C GIS   A++H+  Q  F
Sbjct: 37  VNQQLSYQD-AVGY---CHGISTSLAVVHTTLQANF 68


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 166 RGTESSKFKYKQRIISLTYVFVPLAL 243
           + TES+  K K R + L +VF+ L +
Sbjct: 98  KSTESNSMKMKIRTVLLVFVFIKLCI 123


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
 Frame = +2

Query: 41   LVIKNQSVCFISKSIARLSPLMHGHINML--------GHYTFTLPEDILKGEL-RALNLN 193
            LVI+ QSV  + + + R S  +  H  +L            F LPE  L+G L   L+  
Sbjct: 1099 LVIRRQSVSCLRQLVQRESKEVRNHAQVLVPQGIVDTNKKKFALPESGLEGALFGMLDTE 1158

Query: 194  INNEL 208
            +N EL
Sbjct: 1159 VNKEL 1163


>Z81537-10|CAB04382.1|  416|Caenorhabditis elegans Hypothetical
           protein F41D3.11 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 83  IARLSPLMHGHINMLGHYTFTLPEDILKGELRALNLNINNELSP 214
           +AR +    G +N    Y F LPE  +  +  AL+L ++ +L P
Sbjct: 192 LARNTEYAVGLLNDFADYEFKLPEGSIGTDNVALHLFLSEKLLP 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,777,155
Number of Sequences: 27780
Number of extensions: 77428
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)