Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17p02
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 356 1e-98
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 356 1e-98
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 33 0.33
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 30 2.3
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 30 2.3
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 30 2.3
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 29 3.1
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 29 4.1
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 29 4.1
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 29 4.1
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 4.1
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 29 4.1
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 29 4.1
U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine rec... 29 5.4
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 29 5.4
U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine rece... 29 5.4
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 28 7.1
AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical... 28 7.1
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ... 28 7.1
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 28 9.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 9.4
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 9.4
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 356 bits (876), Expect = 1e-98
Identities = 163/224 (72%), Positives = 198/224 (88%)
Frame = -1
Query: 831 AEKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ 652
++ A+ LRG KAK+++K+R +EK++M+K +K HEEK+ K+ E+ +GA+P YLLDR Q
Sbjct: 36 SQMAKTLRGHKAKLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQ 95
Query: 651 SRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFV 472
+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFV
Sbjct: 96 TSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFV 155
Query: 471 GENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITK 292
GE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGVITK
Sbjct: 156 GESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGVITK 215
Query: 291 GTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 160
GT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 216 GTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 356 bits (876), Expect = 1e-98
Identities = 163/224 (72%), Positives = 198/224 (88%)
Frame = -1
Query: 831 AEKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ 652
++ A+ LRG KAK+++K+R +EK++M+K +K HEEK+ K+ E+ +GA+P YLLDR Q
Sbjct: 36 SQMAKTLRGHKAKLYHKKRYSEKVEMRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQ 95
Query: 651 SRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFV 472
+ VLSNMIKQKRK+KAGK++VPIP+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFV
Sbjct: 96 TSGTVLSNMIKQKRKQKAGKFNVPIPQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFV 155
Query: 471 GENFTRKPPKFERFIRPMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITK 292
GE+FTRKP KFERFIRPM LRFKKAHVTHPEL+ TF LPI+GVKKNPSSQMYTSLGVITK
Sbjct: 156 GESFTRKPAKFERFIRPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPSSQMYTSLGVITK 215
Query: 291 GTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLV 160
GT++EVN+SELG+VTQ GKVVWGK+AQVTNNPENDGCINAVLL+
Sbjct: 216 GTILEVNVSELGMVTQGGKVVWGKFAQVTNNPENDGCINAVLLI 259
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 32.7 bits (71), Expect = 0.33
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = -1
Query: 801 KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTE-KVAEGALPVYLLDRDVQSRAKVLSNM 625
K K +ERR E+ + KK+K +EK N + + E +++ + A+ L N+
Sbjct: 989 KIKAAEEERRKERAEDAKKVKEGQEKIAILNAKVQEKEDKSEARRKQKEMDNEAEKLLNV 1048
Query: 624 IKQKRKEK-AGKW 589
K+K K K KW
Sbjct: 1049 EKEKEKRKIIEKW 1061
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = -1
Query: 828 EKARQLRGIKAKIFNKERRNEKIQM-KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ 652
EK R +KA+ + EK+++ K+K+KA E+K E+ E A + ++ Q
Sbjct: 954 EKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEERRKERAEDAKKV-KEGQ 1012
Query: 651 SRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRK 508
+ +L+ +++K + + + + + D E K+L K K K
Sbjct: 1013 EKIAILNAKVQEKEDKSEAR------RKQKEMDNEAEKLLNVEKEKEK 1054
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = -1
Query: 783 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 604
+E R E+I+ KK+ + ++K + + AE + V L ++ + R +VL ++ KRK
Sbjct: 429 EEERLEEIRRKKE-EERKKKEEEDEKRRKAEESERVRKL-KEEEKRKRVLEEEMEMKRKN 486
Query: 603 KAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGE-NFTRKPPKFERFI 427
+ K + AE+ + + ++ +K K K+ + F + P F R +
Sbjct: 487 EEAKIKLEAEMREKAEQAEIKRREEKSRALKKLQKEETNKMEQMNNCTFLQNVPLF-RHL 545
Query: 426 RP 421
P
Sbjct: 546 HP 547
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 29.9 bits (64), Expect = 2.3
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Frame = -1
Query: 828 EKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEK--NVKHNTEKVAEGALPVYLLDRDV 655
+K ++ K K +KE+ EK + K+KIK E+K +++ TE+ +E A L +
Sbjct: 380 DKEKEKEKEKEKEKDKEKEREKRKSKEKIKEKEKKMGSLEKTTERTSE-APSTNALPKAK 438
Query: 654 QSRAKVLSNMIKQKRKEKAGKWDV-------PIPKVRAQADAEVFK--VLKSGKSKRKA 505
+ + L KQK + + V PI K + A+V K V G SK+KA
Sbjct: 439 PKKIRTLPP--KQKHTKTSSTSSVSHQTPPSPIKKPSPKLPAQVKKKTVSTGGGSKQKA 495
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = -1
Query: 828 EKARQLRGIKAKIFNKERRNEKIQMKK--------KIKAHEEKNVKHNTE---KVAEGAL 682
EK R +KA+ + EK++++K KIK+ EE+ K E KV EG
Sbjct: 915 EKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERRKERAEDAKKVKEGQE 974
Query: 681 PVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKV 568
+ +L+ + Q R KQK + + + + KV
Sbjct: 975 KIAMLNAENQERKDRSEARRKQKEMDNEAEKLLKVKKV 1012
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.9 bits (64), Expect = 2.3
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -1
Query: 783 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNM--IKQKR 610
+E NEK++++++I+ E KN E + E LLDR+ + KV + ++++
Sbjct: 831 EELENEKLKLEEEIQEMEIKN----EEALKENLKLSMLLDREKSEKVKVQKELEEVEKQG 886
Query: 609 KEKAGKWDVPIPKV--RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK 451
+EK + + K + + E+F VL + K + V K+ V + RK
Sbjct: 887 REKLLEKEREFRKTMEEMEQNEEIFNVL---ERKYNEQHKKVMKMNDVLREYERK 938
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 768 EKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSR--AKVLSNMIKQKRKEKAG 595
E+ + ++K A +EK ++ E+ E A Y L ++Q + A +K++ KE+
Sbjct: 942 ERREAEEKAAAEQEKILRRKMEEEREKAQKEYELQLEMQKQKLAAEAEEEVKRRNKEERD 1001
Query: 594 KWDVPIPKVRAQAD 553
+ D + A +D
Sbjct: 1002 RLDAAVSSRLASSD 1015
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 786 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 610
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 609 KEKAGKWDVPIPKVRAQADAE 547
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical
protein T04A8.7b protein.
Length = 606
Score = 29.1 bits (62), Expect = 4.1
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = -1
Query: 612 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 472
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 20 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 79
Query: 471 GENFTRKPPKFE----RFIRPMALRFKKAHV 391
+NF P K++ R RP +LR +AHV
Sbjct: 80 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 110
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 29.1 bits (62), Expect = 4.1
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = -1
Query: 612 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 472
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 95 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 154
Query: 471 GENFTRKPPKFE----RFIRPMALRFKKAHV 391
+NF P K++ R RP +LR +AHV
Sbjct: 155 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 185
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -1
Query: 828 EKARQLRGI-KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ 652
E R +RG + ++ +E+R + ++++ +IKA E +H E++ E + + +
Sbjct: 666 EMERAMRGEERERLLEEEKRRKYLELQNEIKAAREYEEEHAYEEIQESKNTPCPVSQPIL 725
Query: 651 SRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 532
+ + + + EK + P PK D + K L
Sbjct: 726 IPSVFVPVAVPEPIPEKPKRTWQPPPKSEEFLDEHIDKPL 765
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -1
Query: 750 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 577
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 576 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 825 KARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLL--DRDVQ 652
+A++ + +KA+ K ++NE++ KK K K K +T++ E A +L
Sbjct: 258 RAKEDQNVKARKTKKVKKNEEVPSKKSSKM--SKRSKRSTDENLETAKSSRILKDSEPKS 315
Query: 651 SRAKVLSNMIKQKR 610
SR+ V S I R
Sbjct: 316 SRSSVTSQKIDSSR 329
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 786 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 610
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 609 KEKAGKWDVPIPKVRAQADAE 547
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -1
Query: 750 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 577
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 725 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 782
Query: 576 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 783 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 818
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = -1
Query: 750 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 577
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 576 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 481
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine
receptor, class w protein136 protein.
Length = 378
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 374 FSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 526
FS C TW FL+++ I + N L+ K T F FL LP
Sbjct: 122 FSRRCSTWLFLSIAFIRTLIVRNPMNLKYKQLSNQPTAFYTIFGVFLLSLP 172
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 735 HEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLS--NMIKQKRKEKAGKWD 586
+ KNV EK+ G P+ + D D+ A V + +Q++ +KA +W+
Sbjct: 305 NSSKNVAEVVEKMNNGDWPIQIEDEDIPPSAAVNNPKRGYQQQQADKARQWE 356
>U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 7 protein.
Length = 339
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 113 LLNCDNYTFNNEHVYHNTY--NLYWLQSLWTVRTM 15
+ N + Y N Y N Y + YW+Q LW + T+
Sbjct: 7 IYNLEQYGTNCSEEYSNFYENSKYWIQCLWLIPTL 41
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = -1
Query: 828 EKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVK 715
E+ ++ + I K+ +++N++I++KKK+ EEK K
Sbjct: 452 ERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEEEEKTEK 489
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 831 AEKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEK 700
AE ++ + AK+ KE R+E + +K+ EEK + EK
Sbjct: 930 AEDKEKIEQLNAKVREKEERSEARRKQKEKDDEEEKRLYEEKEK 973
>AF025453-10|AAK31402.3| 487|Caenorhabditis elegans Hypothetical
protein C08F1.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 164 WSNLLLSQGKIKMLQLHLLNCDNYTFNNEH 75
W L +S K +M L L+CD + N+EH
Sbjct: 374 WKTLRISVKKEQMCILVYLHCDKFVCNDEH 403
>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
protein Y37E11AM.1 protein.
Length = 1037
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 828 EKARQLRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVK 715
E+A +L+ +K K KE EK+ ++K K +EK K
Sbjct: 988 EEAEKLKELKKKEIPKESYYEKLLKRQKAKEDDEKTEK 1025
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 669 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 553
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 669 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 553
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 346 SYYR*TESSF*FRMCDMGFLEPQCHRS 426
SY S + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 346 SYYR*TESSF*FRMCDMGFLEPQCHRS 426
SY S + MC+MG + P CH+S
Sbjct: 1370 SYQDVDRSQMNYLMCNMGTVSPSCHKS 1396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,947
Number of Sequences: 27780
Number of extensions: 366465
Number of successful extensions: 1280
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -