Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p01
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   0.97 
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   6.8  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.0  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 FLKQCHCLNTTLGCTLVNY 179
           F+K C  L  T GCTL++Y
Sbjct: 301 FIKYCTKLEVTAGCTLISY 319


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +3

Query: 96  IKHRTRYY---VFLKQCHCLNTTLGCTLVNYHFK 188
           + H+  YY    FL  C C     GC LV Y  K
Sbjct: 276 LDHKMLYYDVDPFLFYCMCRRDEYGCHLVGYFSK 309


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +2

Query: 11  IWYGIHS*FGYIYIILTKSY----ANTASIKLYKTSDTLLCIFKTMSLFKYYIRL 163
           +WYG      +  I+L  +      +  S+ LYKT      +  T+ LFK  +R+
Sbjct: 344 VWYGASISIFFALILLRTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIVRI 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,832
Number of Sequences: 5004
Number of extensions: 39091
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)