Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17p01
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily a...    28   4.7  

>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 488 LVINVKLNRKLFISYKINFILEI---NA*STENV*SFFFQYTLYRSVRIF 348
           LV  V++N+KL     +NF+LEI   N+   E + S F +Y    S  +F
Sbjct: 433 LVELVEINKKLTAFANLNFLLEIASPNSTVVEGICSLFARYEQCLSATVF 482


>AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 196 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 5/34 (14%)
 Frame = +1

Query: 4   RKYMVWNTFVIWIHLH---YSYK--ILRQYRVYK 90
           R Y++WN+F+ ++  H   Y+ K  +L+++RV+K
Sbjct: 166 RDYVIWNSFLDFVDRHEKKYTNKREVLKRFRVFK 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,374,606
Number of Sequences: 27780
Number of extensions: 219487
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)