Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17p01
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 25 0.62
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 23 2.5
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 22 3.3
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 22 3.3
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 22 3.3
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 22 3.3
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 22 3.3
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 4.4
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 4.4
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 4.4
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 4.4
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 4.4
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 24.6 bits (51), Expect = 0.62
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 150 YLNSDIVLKIHSNVSDVLYNFIDAVLA*DFVRIM*MYPNYECIPYH 13
+L + ++H N L F+ AVL + + P YE +P H
Sbjct: 120 FLKTAAWARVHVNEGQFLKAFVAAVLTRQDTQSVIFPPVYEILPQH 165
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 22.6 bits (46), Expect = 2.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 205 LLPSRYLKW*LTN 167
LLPS YL+W LT+
Sbjct: 254 LLPSVYLRWNLTS 266
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 MLHSLVSNYLVINVKLNRKLFISYKINFILEI 420
++ SL +NY N N + Y IN+I +I
Sbjct: 81 IISSLSNNYNYSNYNNNNYKQLCYNINYIEQI 112
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 MLHSLVSNYLVINVKLNRKLFISYKINFILEI 420
++ SL +NY N N + Y IN+I +I
Sbjct: 81 IISSLSNNYNYSNYNNNNYKQLCYNINYIEQI 112
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 MLHSLVSNYLVINVKLNRKLFISYKINFILEI 420
++ SL +NY N N + Y IN+I +I
Sbjct: 81 IISSLSNNYNYSNYNNNNYKQLCYNINYIEQI 112
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 MLHSLVSNYLVINVKLNRKLFISYKINFILEI 420
++ SL +NY N N + Y IN+I +I
Sbjct: 81 IISSLSNNYNYSNYNNNNYKQLCYNINYIEQI 112
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 MLHSLVSNYLVINVKLNRKLFISYKINFILEI 420
++ SL +NY N N + Y IN+I +I
Sbjct: 81 IISSLSNNYNYSNYNNNNYKQLCYNINYIEQI 112
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 NNVNVSKLRMYSIPYI 8
NN N KL+ Y+I YI
Sbjct: 93 NNNNYKKLQYYNINYI 108
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 NNVNVSKLRMYSIPYI 8
NN N KL+ Y+I YI
Sbjct: 93 NNNNYKKLQYYNINYI 108
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.8 bits (44), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 NNVNVSKLRMYSIPYI 8
NN N KL+ Y+I YI
Sbjct: 93 NNNNYKKLQYYNINYI 108
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 NNVNVSKLRMYSIPYI 8
NN N KL+ Y+I YI
Sbjct: 93 NNNNYKKLQYYNINYI 108
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 4.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 55 NNVNVSKLRMYSIPYI 8
NN N KL+ Y+I YI
Sbjct: 326 NNNNYKKLQYYNINYI 341
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,412
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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