Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17o23
(733 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 347 7e-96
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 347 7e-96
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 327 8e-90
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 276 3e-74
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 267 9e-72
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 202 4e-52
AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-P... 29 8.6
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 347 bits (854), Expect = 7e-96
Identities = 170/248 (68%), Positives = 197/248 (79%), Gaps = 5/248 (2%)
Frame = -2
Query: 729 KKVLRRRLSDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 550
KK ++++ DPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 549 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 370
LQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTV 133
Query: 369 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 190
DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL
Sbjct: 134 DGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLAL 193
Query: 189 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE--- 19
DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE
Sbjct: 194 DSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAV 253
Query: 18 --RPEGYE 1
RPEGYE
Sbjct: 254 IDRPEGYE 261
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 347 bits (854), Expect = 7e-96
Identities = 170/248 (68%), Positives = 197/248 (79%), Gaps = 5/248 (2%)
Frame = -2
Query: 729 KKVLRRRLSDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 550
KK ++++ DPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 549 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 370
LQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTV 133
Query: 369 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 190
DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L+++VNKL
Sbjct: 134 DGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLAL 193
Query: 189 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE--- 19
DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE
Sbjct: 194 DSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAV 253
Query: 18 --RPEGYE 1
RPEGYE
Sbjct: 254 IDRPEGYE 261
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 327 bits (804), Expect = 8e-90
Identities = 158/224 (70%), Positives = 185/224 (82%), Gaps = 2/224 (0%)
Frame = -2
Query: 729 KKVLRRRLSDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA- 553
KK ++++ DPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ KGRVFEVSL
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVP 73
Query: 552 DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 373
DLQ D D E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 74 DLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKT 133
Query: 372 TDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRDVTNSELREVVNKL 196
DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +IIT +V+ ++L+++VNKL
Sbjct: 134 VDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKL 193
Query: 195 IPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 64
DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 194 ALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 237
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 276 bits (676), Expect = 3e-74
Identities = 137/198 (69%), Positives = 155/198 (78%), Gaps = 5/198 (2%)
Frame = -2
Query: 579 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 400
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 399 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 220
IEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 219 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXX 40
L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSV 193
Query: 39 XXGDKSE-----RPEGYE 1
SE RPEGYE
Sbjct: 194 EAVVSSEGAVIDRPEGYE 211
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 267 bits (655), Expect = 9e-72
Identities = 125/175 (71%), Positives = 148/175 (84%)
Frame = -2
Query: 729 KKVLRRRLSDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 550
KK ++++ DPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 549 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 370
LQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTV 133
Query: 369 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 205
DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++L++++
Sbjct: 134 DGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLL 188
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 202 bits (493), Expect = 4e-52
Identities = 100/156 (64%), Positives = 118/156 (75%), Gaps = 5/156 (3%)
Frame = -2
Query: 453 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 274
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 273 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 94
IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PR
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120
Query: 93 FEISKLMELHXXXXXXXXXXGDKSE-----RPEGYE 1
F++SKL+ELH SE RPEGYE
Sbjct: 121 FDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 156
>AE013599-2921|AAF57537.1| 632|Drosophila melanogaster CG15904-PA
protein.
Length = 632
Score = 28.7 bits (61), Expect = 8.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 121 SDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDC 273
+ AN+ M LLD++ GV L+H E V + ++DC
Sbjct: 264 TSANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,911,839
Number of Sequences: 53049
Number of extensions: 747039
Number of successful extensions: 2278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2276
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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