Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17o23
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 286 1e-77
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical pr... 30 1.5
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 30 1.5
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69634-5|CAA93456.1| 731|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 286 bits (702), Expect = 1e-77
Identities = 141/243 (58%), Positives = 180/243 (74%)
Frame = -2
Query: 729 KKVLRRRLSDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 550
KK +++ DPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL D
Sbjct: 12 KKGGKKKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGD 71
Query: 549 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTT 370
L ++E FRKF+LIAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTT
Sbjct: 72 LN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTT 128
Query: 369 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 190
DGY LRVF I FT K +KT Y + +++R IR +M I ++VT +L+EVV+KLIP
Sbjct: 129 DGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIP 188
Query: 189 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSERPE 10
DSI KDIEK C +YPL++V IRKVK++KRP+ ++ +L +LH G+K +RP+
Sbjct: 189 DSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVGADGEKVDRPD 247
Query: 9 GYE 1
YE
Sbjct: 248 DYE 250
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
C25G4.5 protein.
Length = 1263
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 401 RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 577
R H H LS+ SMP ++ T+RP + + L++ + + + RS R S +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181
Query: 578 PFNPSEAI 601
N SE++
Sbjct: 1182 VLNSSESL 1189
>Z66497-4|CAA91284.1| 401|Caenorhabditis elegans Hypothetical
protein K08F8.2 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 389 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 562
+AS++ LT+ L L +P LQ L+P T S + + ++ S S S+ S+
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190
Query: 563 TSKTLPFNPSEA 598
+S PF PSE+
Sbjct: 191 SSAFHPFRPSES 202
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 401 RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 577
R H H LS+ SMP ++ T+RP + + L++ + + + RS R S +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181
Query: 578 PFNPSEAI 601
N SE++
Sbjct: 1182 VLNSSESL 1189
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 75 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 215
S+S S N ASST S + R +P+ PWQ Q S +PPP
Sbjct: 94 SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142
>AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical
protein C18E3.3 protein.
Length = 893
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -2
Query: 624 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIA-EYVQGRNVLCNFHGMD 448
+ RT+ +KI S GL ++ E S ++ +A R +R F A EY+ G N++ G
Sbjct: 144 LKRTKESKIGS-GLPRKLEEDS--NISEFHNAHRFYRSFLEAAVEYLYGYNIMWEIDGGG 200
Query: 447 LTTDKLRW 424
D++ W
Sbjct: 201 RLEDEINW 208
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -2
Query: 333 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 166
T + S+S + QH Q RA++K M E + V N ++ E VV K + D +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255
>Z69634-5|CAA93456.1| 731|Caenorhabditis elegans Hypothetical
protein B0001.7 protein.
Length = 731
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 585 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 475
L+G + +S+ D +A TD E S + R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,514
Number of Sequences: 27780
Number of extensions: 374195
Number of successful extensions: 1207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -