Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17o19
(856 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 487 e-138
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 487 e-138
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 487 e-138
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 487 e-138
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 487 e-138
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 487 bits (1201), Expect = e-138
Identities = 222/275 (80%), Positives = 246/275 (89%)
Frame = -3
Query: 854 RRRLSTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 675
+++ TKASKKW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQL
Sbjct: 137 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 196
Query: 674 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH 495
NGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTKKLPRKTH
Sbjct: 197 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 256
Query: 494 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 315
KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNAST
Sbjct: 257 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 316
Query: 314 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 135
EYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I L
Sbjct: 317 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 376
Query: 134 KFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
KFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 377 KFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 487 bits (1201), Expect = e-138
Identities = 222/275 (80%), Positives = 246/275 (89%)
Frame = -3
Query: 854 RRRLSTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 675
+++ TKASKKW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQL
Sbjct: 126 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 185
Query: 674 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH 495
NGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTKKLPRKTH
Sbjct: 186 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 245
Query: 494 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 315
KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNAST
Sbjct: 246 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 305
Query: 314 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 135
EYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I L
Sbjct: 306 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 365
Query: 134 KFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
KFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 366 KFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 487 bits (1201), Expect = e-138
Identities = 222/275 (80%), Positives = 246/275 (89%)
Frame = -3
Query: 854 RRRLSTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 675
+++ TKASKKW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQL
Sbjct: 113 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 172
Query: 674 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH 495
NGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTKKLPRKTH
Sbjct: 173 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 232
Query: 494 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 315
KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNAST
Sbjct: 233 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 292
Query: 314 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 135
EYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I L
Sbjct: 293 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 352
Query: 134 KFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
KFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 353 KFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 487 bits (1201), Expect = e-138
Identities = 222/275 (80%), Positives = 246/275 (89%)
Frame = -3
Query: 854 RRRLSTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 675
+++ TKASKKW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQL
Sbjct: 113 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 172
Query: 674 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH 495
NGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTKKLPRKTH
Sbjct: 173 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 232
Query: 494 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 315
KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNAST
Sbjct: 233 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 292
Query: 314 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 135
EYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I L
Sbjct: 293 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 352
Query: 134 KFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
KFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 353 KFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 487 bits (1201), Expect = e-138
Identities = 222/275 (80%), Positives = 246/275 (89%)
Frame = -3
Query: 854 RRRLSTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 675
+++ TKASKKW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQL
Sbjct: 126 KKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQL 185
Query: 674 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH 495
NGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTKKLPRKTH
Sbjct: 186 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 245
Query: 494 KGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNAST 315
KGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNAST
Sbjct: 246 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 305
Query: 314 EYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINL 135
EYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+ALE+I L
Sbjct: 306 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 365
Query: 134 KFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
KFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 366 KFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,571,555
Number of Sequences: 53049
Number of extensions: 884997
Number of successful extensions: 2434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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