Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17o18
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    29   0.56 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   4.0  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   6.9  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    26   6.9  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 564 LYATFTYQSPHKTKLYSRIPQYFIQDIKITRTNETIFFSLQNLYITSIRY*TPNLNIMCV 743
           +++ F Y+ P  TKL + IP+YF  ++ I      I   L  L+ + I +   NL   C+
Sbjct: 458 IWSVFEYKDP-STKLSALIPKYFFSELNIASICYEISSGLAFLHNSGIAH--HNLTTECI 514


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 565 YTPPLLINHLIKPSFTHVFHNILYKTSKSL-AQMRPSFFHFK 687
           YTP   +N   +PS+T   H +L  T+  +   +RP++  ++
Sbjct: 255 YTPSENLNSDGQPSYTSSTHGVLMLTANGMEVLLRPNYLQYR 296


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -1

Query: 119 MKMVGPTISYILMSLAK*RFKLFEWIGFIV 30
           ++ + P+ S+I  ++AK   + ++W+GF +
Sbjct: 161 IRSIWPSFSHIPNTMAKSGTETYQWVGFFI 190


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -1

Query: 119 MKMVGPTISYILMSLAK*RFKLFEWIGFIV 30
           ++ + P+ S+I  ++AK   + ++W+GF +
Sbjct: 163 IRSIWPSFSHIPNTMAKSGTETYQWVGFFI 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,241
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)