Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17o18
(776 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 24 1.4
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 24 1.8
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 23 3.2
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.2
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 22 7.3
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 9.7
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 9.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 9.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 9.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.7
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 24.2 bits (50), Expect = 1.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 680 TSKLIHNFNKILNTKFKYNVRYISLRNYYIYK 775
++K IHN N N + N + NY YK
Sbjct: 319 SNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYK 350
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +2
Query: 680 TSKLIHN---FNKILNTKFKYNVRYI 748
++K IHN +N N K YN+ YI
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYNINYI 333
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 653 SHK*DHLFFTSKLIHNFNKILNTK 724
SHK +L++++ HN N + NTK
Sbjct: 256 SHKTQNLYYSAMSSHNLNYV-NTK 278
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 4.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 472 NYKLSKNELYDALRKSHV 525
NY L+K++L +A K+H+
Sbjct: 586 NYSLAKHQLKEAFVKAHL 603
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 176 CCPEPYVDVTFTIQIRRRTLYY 197
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 244 CCPEPYVDVTFTIQIRRRTLYY 265
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 546 CCVRRYLYATFTYQSPHKTKLY 611
CC Y+ TFT Q +T Y
Sbjct: 244 CCPEPYVDVTFTIQIRRRTLYY 265
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +2
Query: 656 HK*DHLFFTSKLIHNFNKILNTKFKYNVRYISL 754
HK D L +F+++ + F Y+ RY +
Sbjct: 206 HKGDALIVYQNADDSFHRLTSNTFDYDPRYAKM 238
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 99 NNYNKHNYNKLYYNINYI 116
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 332 NNYNKHNYNKLYYNINYI 349
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 695 HNFNKILNTKFKYNVRYI 748
+N+NK K YN+ YI
Sbjct: 332 NNYNKHNYNKLYYNINYI 349
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 9.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 186 RRYIHLFLRQLCILYYLNSII*YEDGGSY 100
R+ LF+ +C + YL + +GG Y
Sbjct: 412 RKRKELFIAIVCFVSYLIGLFCITEGGMY 440
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 9.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 186 RRYIHLFLRQLCILYYLNSII*YEDGGSY 100
R+ LF+ +C + YL + +GG Y
Sbjct: 465 RKRKELFIAIVCFVSYLIGLFCITEGGMY 493
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,643
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 32
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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