Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17o08
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   1.00 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   4.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   7.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   7.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.3  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 677 LNSFNVTDVLGNFVVGSSFGRDRCHYG 757
           L  F   DVLGN +  S    +R +YG
Sbjct: 334 LTEFEGIDVLGNIIESSILSPNRNYYG 360


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 698 DVLGNFVVGSSFGRDRCHYG 757
           D+LGN +  S    +R +YG
Sbjct: 341 DILGNMIESSILSPNRTYYG 360


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 564 CLNMTR**EDSTRYTVHLPY 623
           CLN     + +T YT H PY
Sbjct: 70  CLNGATCQDHTTHYTCHCPY 89


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 343 IFSFYAFFHTNVSFAAFFKIG 405
           +F  +  FH  V  A  FKIG
Sbjct: 601 LFHCHIEFHVEVGMALVFKIG 621


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 283 GRFEKKQCTARRYV 242
           GR  +K C+ +RYV
Sbjct: 778 GRITQKSCSTKRYV 791



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 805 GTSFDCNKFLRSDDMTPVVTT 743
           G SF   + LRSDD+    T+
Sbjct: 135 GVSFSKKQILRSDDLAVKTTS 155


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 514 PNSIHGILQWRGF 476
           P S+HG L WR F
Sbjct: 296 PLSLHGQLLWREF 308


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 811 RSGTSFDCNKFLRSDDMTPVVTTITP-KRTADYKITEYVS 695
           +SG S+  NK +   D +PV   + P   T+ + +   VS
Sbjct: 53  KSGGSYSSNKNVSRADHSPVFGKVEPVPHTSSFNMGYLVS 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,329
Number of Sequences: 336
Number of extensions: 4946
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)