Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17o08
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0244 + 1786009-1788048                                           30   2.7  
03_02_0310 + 7315185-7316820,7318332-7318879                           30   2.7  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    29   3.5  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    29   4.7  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   6.2  

>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 72  LVVYTHLGI*LKDA*LHPHTWSRNCKNVSEP 164
           L+VY H+     D  LH HT+S NC+ +  P
Sbjct: 432 LLVYEHMPNGSLDKYLHEHTYSSNCRTLGWP 462


>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 775 RSDDMTPVVT-TITPKRTA-DYKITEYVSDVKTIKPSNRPL 659
           +S DM  + T TITP +++ ++K T  + D   +KPS +PL
Sbjct: 568 QSTDMRSLQTPTITPPKSSFNFKTTTSILDTDALKPSPKPL 608


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 636 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
           K+     D   NV +PL+ A  L+      +D  +  DKL + P   F N
Sbjct: 658 KRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKN 707


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 160 SLDQTSVFTFGTRNHVCNVTV*YKPLPVHTAARYIVFFQIAQYFLYARRHIDLAVQHVDD 339
           S+   +V T   RN +C   V      + +A+  +   +   +  Y  RH   +  HV D
Sbjct: 739 SISIPTVTTLALRNTICGKPVLKDVASLVSASVVLYCVESGNFDAYDLRHYLWSFSHVKD 798

Query: 340 IIFSF 354
           +IFS+
Sbjct: 799 LIFSY 803


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 790  CNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 683
            C  FLRS ++ PV+  +  +++ D  I+EY S + T
Sbjct: 1221 CRLFLRSSELLPVIVHL--RQSPDPAISEYASAIAT 1254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,541,161
Number of Sequences: 37544
Number of extensions: 489141
Number of successful extensions: 1152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)