Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17o08
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                29   6.3  
SB_56506| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      28   8.3  

>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 838 RRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 683
           R N +D C  S   F+ +   R +++      +T     DY++ E  S VKT
Sbjct: 77  RHNFNDFCVSSFEEFENDVCYRFEEVFRKKDKVTHYEKDDYEVEEKASTVKT 128


>SB_56506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 195 CTKCENRCLIKALTHFYNYDSKCVGEVMHLLIKSQD 88
           C +CE  C I A+      ++ C+G+ + LL K  D
Sbjct: 13  CEQCEKLCQISAVMFKDEGEALCLGDAVDLLRKDPD 48


>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
 Frame = +2

Query: 554 VAFLSKHDALMRGLHTLYG-ASAIFRGFLHQRSR-FD*RSIG--WLNSFNVTDV---LGN 712
           + F ++ +A+ R  +T +G A  IF   L++  R       G  W+NSFN+T V    G 
Sbjct: 663 LTFQTEEEAVTRANNTTFGLAGGIFTRDLNRAHRVIGSLQAGTCWINSFNITPVEVPFGG 722

Query: 713 FVVGSSFGRD 742
           + + S FGR+
Sbjct: 723 YKM-SGFGRE 731


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,981,991
Number of Sequences: 59808
Number of extensions: 608015
Number of successful extensions: 1346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)