Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n23
(220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 26 0.59
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 25 1.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 24 2.4
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S... 24 2.4
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 23 4.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 4.1
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 23 4.1
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 23 4.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 4.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 5.5
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 23 5.5
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 23 5.5
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 23 5.5
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 23 7.2
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 23 7.2
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 7.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 23 7.2
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 22 9.6
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 22 9.6
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 22 9.6
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 22 9.6
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 22 9.6
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 0.59
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 208 RSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHN 83
RS+ RL + + + +PN N L+ V+ +P+NQ K KH+
Sbjct: 292 RSVGRLVRAICILNHP-IPNTDN-LDSVQIIIPQNQVKRKHD 331
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 119 NAASKPVQSQAQQDHAVAKLDSRTAHRCRAVEHDGTSD 6
NA K + Q+D A+ K + HR VE D T +
Sbjct: 62 NAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKE 99
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 2.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -1
Query: 217 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 38
S N+SIK + SSD+ F SD + + + V P + +++ + N D
Sbjct: 604 SYNKSIKDMSSSDMAF-SDPAYSGTTLRSSVDLNTPEYPFSNRNDSDSTFTNNKYVSPWD 662
Query: 37 AVQSS 23
A++ +
Sbjct: 663 AIEEA 667
>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
S8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 36 ASMSCSRVKFCNSVILLCLALY 101
A S + V CNSV+ LC LY
Sbjct: 16 ARKSLASVPNCNSVLELCAVLY 37
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 26 RLHGIDELFSSQVLQQRDLVVLGFVLVSRQRF 121
RL DEL S +Q DLV++G L F
Sbjct: 283 RLGWEDELKSFAEVQNSDLVIVGLSLSKNDEF 314
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = -1
Query: 217 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 38
SLN + S + Y+ M +K+ + + +KA LL N Q I+
Sbjct: 626 SLNHCKSLISSDNAAILGTYIDELMRHQPSLKDPIVKMIFKACDQVSALLDNFNPFQYIN 685
Query: 37 A 35
A
Sbjct: 686 A 686
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = -1
Query: 151 NAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTER 11
N ++ + +T R+ + H K+ L+N R + V++ +R
Sbjct: 237 NGTGFVHAIMDTF-RHHVRRTHGKVIKLENCIRRTALQTVKNKYAQR 282
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 99 TKPSTTRSRCC 67
T+P+T+R RCC
Sbjct: 141 TRPATSRRRCC 151
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 214 LNRSIKRLGSSDVVFSSDYVPNA 146
+ + + LG++ VFS DY+ NA
Sbjct: 84 ITKQLYLLGTNTSVFSEDYLSNA 106
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = -1
Query: 151 NAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTER 11
N ++ + +T R+ + H K+ L+N R + V++ +R
Sbjct: 237 NGTGFVHAIMDTF-RHHVRRTHGKVIKLENCIRRTALQTVKNKYAQR 282
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 117 RCLETSTKPSTTRSRCCKT*LENS 46
+CL S + SRCC L NS
Sbjct: 2256 KCLSESDENDVLISRCCTMWLSNS 2279
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 38 IDELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKHV 142
+DEL +QV+Q + +L + FN KH+
Sbjct: 1 MDELSETQVMQNETATAVLPLLNGESQSFNLQKHL 35
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 23.0 bits (47), Expect = 5.5
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = -1
Query: 190 GSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKH---NKITLLQNL-TREQLID 38
GSS++++S D+ PN V K+++ L + + ++I + +NL +++L+D
Sbjct: 326 GSSELLYSEDFKPNVDPV--KIQQILHKQNKIIEEKWISQIRISKNLEVKQRLLD 378
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 109 RNQYKAKHNKITLLQNLTREQL 44
+N+ AKH K+T LQ +++L
Sbjct: 76 KNKGDAKHTKLTSLQQKMKDKL 97
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 63 FCNSVILLCLALYWFRGSV 119
FC V+ L +Y F+G+V
Sbjct: 251 FCGGVLTAILMMYKFKGAV 269
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 57 LENSSSMPCSRA*RN 13
++N+S+MPC RA N
Sbjct: 788 MQNNSTMPCFRAGEN 802
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 187 SSDVVFSSDYVPNAMNVLNKVKE-TLPRNQYKAKHNK 80
SSD S DY P+ +NV KE +P+ K K
Sbjct: 64 SSDKSKSEDYQPSNVNVWALRKEKMIPKKHSHVKQEK 100
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 148 AMNVLNKVKETLPRNQYKAKHNKITLLQN 62
AMNV+ LPRN + K T L N
Sbjct: 1006 AMNVIFFFSMDLPRNAFMQTLTKFTHLNN 1034
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 118 TLPRNQYKAKHNKITLLQNLTRE 50
TLP++ + K ++ LQNL+RE
Sbjct: 184 TLPQSLEQIKKSQEEALQNLSRE 206
>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 139
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 142 NVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQ 8
N ++K K+ + KAK L+ RE+ +D S ++Q
Sbjct: 56 NGISKKKKNKKQTSKKAKDKLAAALKAQAREERLDTKISKSLQKQ 100
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 81 LLCLALYWFRGSVSLTLLSTFMAL 152
L C+ YWF ++L F++L
Sbjct: 41 LCCITSYWFSSGPFISLSFWFLSL 64
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 158 IVAAKYHVGRTQA 196
I AAKYH+G T A
Sbjct: 123 IFAAKYHIGLTVA 135
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 181 DVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTE 14
D V DY+ A+ +++ LP++ K K K L + +L+ +Q + E
Sbjct: 402 DFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQ-LQKEVAE 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,022
Number of Sequences: 5004
Number of extensions: 12806
Number of successful extensions: 61
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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