Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n23
(220 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY226547-1|AAO47373.1| 511|Drosophila melanogaster pickpocket 1... 30 0.38
AE014297-4408|AAF56913.2| 511|Drosophila melanogaster CG18287-P... 30 0.38
AY864367-1|AAX38005.1| 574|Drosophila melanogaster scavenger re... 27 4.7
M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger ho... 26 6.2
AY118821-1|AAM50681.1| 212|Drosophila melanogaster GH25962p pro... 26 6.2
AY084135-1|AAL89873.1| 382|Drosophila melanogaster RE21313p pro... 26 6.2
AE014296-3370|AAF51604.1| 382|Drosophila melanogaster CG5199-PA... 26 6.2
AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA p... 26 6.2
AE013599-1570|AAF58469.2| 212|Drosophila melanogaster CG30052-P... 26 6.2
BT025065-1|ABE73236.1| 746|Drosophila melanogaster IP15551p pro... 26 8.2
AE014298-2441|AAF48639.3| 2224|Drosophila melanogaster CG18572-P... 26 8.2
>AY226547-1|AAO47373.1| 511|Drosophila melanogaster pickpocket 19
protein.
Length = 511
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 CNLTFRHARLHGIDELFSSQVLQQRDL---VVLGFVLVSRQRFFNFVKHVH 145
CN +F H+ +HG+ +F Q L QR L +VLG V+ + + H H
Sbjct: 34 CN-SFAHSNIHGMQHVFGEQHLWQRCLWLAIVLGAVITGFS-LYTVLMHRH 82
>AE014297-4408|AAF56913.2| 511|Drosophila melanogaster CG18287-PA
protein.
Length = 511
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 2 CNLTFRHARLHGIDELFSSQVLQQRDL---VVLGFVLVSRQRFFNFVKHVH 145
CN +F H+ +HG+ +F Q L QR L +VLG V+ + + H H
Sbjct: 34 CN-SFAHSNIHGMQHVFGEQHLWQRCLWLAIVLGAVITGFS-LYTVLMHRH 82
>AY864367-1|AAX38005.1| 574|Drosophila melanogaster scavenger
receptor protein.
Length = 574
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 186 RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT*LENSSSMPCSRA*RNV 10
RPT T T T K T+ KP+TT S K+ +S+ P + NV
Sbjct: 377 RPTTTTTTTKATTTKRTTTTKKPTTTSTTPKPTTTTSTTPKSTTSTTSTTPTTTTTINV 435
>M63450-1|AAA29051.1| 3005|Drosophila melanogaster zinc-finger
homeodomain protein 2 protein.
Length = 3005
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 145 MNVLNKVKETLPRNQYKAKHNKITLLQNLTR 53
+N +N ++E P+N+YK ++ + L N+ +
Sbjct: 968 LNFINHIREGGPQNEYKMQYQQQQLAANVVQ 998
>AY118821-1|AAM50681.1| 212|Drosophila melanogaster GH25962p
protein.
Length = 212
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 219 AVLTVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKP 91
A ++ ++ RP++ T CP P +LK++C++ P
Sbjct: 18 AAVSADVDCSKRPSFVNPKTCCPMPDFVTAELKQKCIKFDMTP 60
>AY084135-1|AAL89873.1| 382|Drosophila melanogaster RE21313p
protein.
Length = 382
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 139 VLNKVK-ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSM 20
V+ K+K E P Q +LLQ L++EQLID + +++
Sbjct: 175 VVKKLKMEDRPVGQTNTDATLPSLLQGLSQEQLIDLIMNNI 215
>AE014296-3370|AAF51604.1| 382|Drosophila melanogaster CG5199-PA
protein.
Length = 382
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 139 VLNKVK-ETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSM 20
V+ K+K E P Q +LLQ L++EQLID + +++
Sbjct: 175 VVKKLKMEDRPVGQTNTDATLPSLLQGLSQEQLIDLIMNNI 215
>AE014135-89|AAF59339.2| 3005|Drosophila melanogaster CG1449-PA
protein.
Length = 3005
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 145 MNVLNKVKETLPRNQYKAKHNKITLLQNLTR 53
+N +N ++E P+N+YK ++ + L N+ +
Sbjct: 968 LNFINHIREGGPQNEYKMQYQQQQLAANVVQ 998
>AE013599-1570|AAF58469.2| 212|Drosophila melanogaster CG30052-PA
protein.
Length = 212
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 219 AVLTVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLETSTKP 91
A ++ ++ RP++ T CP P +LK++C++ P
Sbjct: 18 AAVSADVDCSKRPSFVNPKTCCPMPDFVTAELKQKCIKFDMTP 60
>BT025065-1|ABE73236.1| 746|Drosophila melanogaster IP15551p
protein.
Length = 746
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 14 FRHARLHGIDELFSSQVLQQR-DLVVLGFVLVSRQRFFNFVKHVHGVGHIVAAKYHVGRT 190
F H R G+ +LF+ + D VL + R+RF N + GH+V H+ R
Sbjct: 635 FVHQR--GVKQLFARDLKNVLPDTDVLYMTRIQRERFDNVEDYEKCCGHLVLTPEHMMRA 692
Query: 191 Q 193
+
Sbjct: 693 K 693
>AE014298-2441|AAF48639.3| 2224|Drosophila melanogaster CG18572-PA,
isoform A protein.
Length = 2224
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 14 FRHARLHGIDELFSSQVLQQR-DLVVLGFVLVSRQRFFNFVKHVHGVGHIVAAKYHVGRT 190
F H R G+ +LF+ + D VL + R+RF N + GH+V H+ R
Sbjct: 2113 FVHQR--GVKQLFARDLKNVLPDTDVLYMTRIQRERFDNVEDYEKCCGHLVLTPEHMMRA 2170
Query: 191 Q 193
+
Sbjct: 2171 K 2171
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,279
Number of Sequences: 53049
Number of extensions: 147436
Number of successful extensions: 664
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 24,988,368
effective HSP length: 52
effective length of database: 22,229,820
effective search space used: 444596400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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