Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n23
(220 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 28 0.78
AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical ... 28 1.0
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 26 3.2
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 26 3.2
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 26 3.2
Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z48544-1|CAA88435.1| 473|Caenorhabditis elegans Hypothetical pr... 25 9.6
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 25 9.6
U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical pr... 25 9.6
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 25 9.6
AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical... 25 9.6
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 25 9.6
AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical ... 25 9.6
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 28.3 bits (60), Expect = 0.78
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 157 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLT 56
+PN + K+ E+ P + Y+AK N +T ++++
Sbjct: 383 IPNPTRKVMKILESFPYDVYEAKRNMLTYAESIS 416
>AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.14 protein.
Length = 468
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 162 TMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT*LE 52
T C P + +L C E TK + R RCCKT +E
Sbjct: 273 TKCQEPVEKIFELT--CSECMTKQTVERFRCCKTCIE 307
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 160 YVPNAMNVLNKVKETLPRNQYKAKH 86
Y+ N NVLN ++ P YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 160 YVPNAMNVLNKVKETLPRNQYKAKH 86
Y+ N NVLN ++ P YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 160 YVPNAMNVLNKVKETLPRNQYKAKH 86
Y+ N NVLN ++ P YK +H
Sbjct: 133 YLSNEQNVLNNGRKIFPALNYKVEH 157
>Z81134-8|CAB57908.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 157 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSS 23
VP + L+ VK L +Y+ + ITL + T E LID ++ +
Sbjct: 193 VPQSELDLDLVKSILA--EYRIHNADITLRYDATSEDLIDVIEGN 235
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 186 RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 61
+PT AT + T T+ T+T PSTT S KT
Sbjct: 522 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 563
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 186 RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 61
+PT AT + T T+ T+T PSTT S KT
Sbjct: 363 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 404
>Z48544-1|CAA88435.1| 473|Caenorhabditis elegans Hypothetical
protein ZK945.1 protein.
Length = 473
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 11 TFRHARLHGIDELFSSQVLQQRDLVVLGFVLVSRQRFFN 127
TF + LH ++++ + + + RDL L F LV + + F+
Sbjct: 324 TFNNPTLHAMEQVAALGITKSRDLARL-FSLVQQGKLFS 361
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 186 RPTWYLAATMCPTP*TCLTKLKKRCLETSTKPSTTRSRCCKT 61
+PT AT + T T+ T+T PSTT S KT
Sbjct: 403 KPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKT 444
>U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical
protein M03A1.6a protein.
Length = 765
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 166 SDYVPNAMNVLNKVKETLPRN 104
S VPNA +LN + ET RN
Sbjct: 28 SKSVPNARKILNDLVETTERN 48
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
protein B0416.1 protein.
Length = 1203
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 154 PNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQ 8
PN ++L K+++ PRN + + ++ +L L LI ++ + Q
Sbjct: 419 PNIFDLLGKIEKLHPRNALRFQLGRVLVLYILNYYTLIYSLMLQLEHLQ 467
>AL117202-33|CAB55097.1| 366|Caenorhabditis elegans Hypothetical
protein T28D6.6 protein.
Length = 366
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 157 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSS 23
VP + L+ VK L +Y+ + ITL + T E LID ++ +
Sbjct: 193 VPQSELDLDLVKSILA--EYRIHNADITLRYDATSEDLIDVIEGN 235
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 RLHGI-DELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKH 139
++H I DEL + ++++DL V+ +V+ + N KH
Sbjct: 287 KIHAILDELVRQKKIKKKDLGVIYLNIVNNENIKNTPKH 325
>AF025462-3|AAB71002.1| 309|Caenorhabditis elegans Hypothetical
protein K10F12.4a protein.
Length = 309
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 178 VVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLT 56
VV+ S+ + ++ L LPR+ Y+ H KI L++ L+
Sbjct: 156 VVWESNVIVEYLDELFPTNTILPRDAYEKAHQKI-LVERLS 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,694,250
Number of Sequences: 27780
Number of extensions: 74321
Number of successful extensions: 291
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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