Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n23
(220 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 0.32
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 0.32
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 0.32
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 0.32
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 0.32
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 0.32
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 0.32
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 21 2.3
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 2.3
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 19 5.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 19 5.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 19 5.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 19 5.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 19 5.3
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 19 6.9
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 19 9.2
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 152 IRRTGEGSKPIFEREEIKNVLTKINKIKE 180
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 168 IRRTGEGSKPIFEREEIKNVLTKINKIKE 196
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.4 bits (48), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 202 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 119
I+R G S +F + + N + +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 20.6 bits (41), Expect = 2.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 175 VFSSDYVPNAMNVLNKVKETLPRN 104
VF S Y P MN+L + E R+
Sbjct: 365 VFLSLYQPQGMNILGDLIEGTGRS 388
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 20.6 bits (41), Expect = 2.3
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = +1
Query: 79 SCCAWLC 99
SCC W C
Sbjct: 10 SCCCWCC 16
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 19.4 bits (38), Expect = 5.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 78 ILLCLALYWFRG 113
IL+C+A+Y RG
Sbjct: 44 ILVCVAIYTDRG 55
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.4 bits (38), Expect = 5.3
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 112 PRNQYKAKHN 83
P+NQYK ++N
Sbjct: 111 PKNQYKNQNN 120
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.4 bits (38), Expect = 5.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = -2
Query: 198 NAWVRPTWY 172
N WV +WY
Sbjct: 78 NLWVEQSWY 86
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.4 bits (38), Expect = 5.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = -2
Query: 198 NAWVRPTWY 172
N WV +WY
Sbjct: 78 NLWVEQSWY 86
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.4 bits (38), Expect = 5.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Frame = -2
Query: 198 NAWVRPTWY 172
N WV +WY
Sbjct: 74 NLWVEQSWY 82
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 19.0 bits (37), Expect = 6.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 98 QSQAQQDHAVA 66
QSQAQQ H A
Sbjct: 187 QSQAQQQHLQA 197
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 18.6 bits (36), Expect = 9.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 44 ELFSSQVLQQRDLVVLGFVLVSRQRF 121
ELFSSQ + +L+ L V RF
Sbjct: 513 ELFSSQQKTKNNLMKLETTPVLPSRF 538
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,109
Number of Sequences: 438
Number of extensions: 965
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3281070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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