Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n11
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 89 9e-19
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 3e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 3e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 3e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.016
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.016
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.34
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.44
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.78
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 4.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.5
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.5
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 7.2
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 9.6
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 9.6
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 88.6 bits (210), Expect = 9e-19
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 612
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 611 NCPDGTK-----TCYVCGKPGHISREC 546
+CP CY CG+ GHI+R+C
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 87.0 bits (206), Expect = 3e-18
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------A 657
++ CY C GH+ R+C SP+ CY C + GHIAR+C G++S +
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRS 114
Query: 656 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 537
CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 115 NMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 83.0 bits (196), Expect = 5e-17
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 609
CY CN TGH A EC + E +CY C GH+ R+CP CY C + GHI+R+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 608 C-PDGTKT------------CYVCGKPGHISREC 546
C +G ++ CY CG GH +R+C
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 728 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 555
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 554 RECDEARN 531
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 58.8 bits (136), Expect = 8e-10
Identities = 26/61 (42%), Positives = 32/61 (52%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 609
CY C GH AR+C CY+C K GH + C + S Q CY CN+ GHI+ N
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVN 171
Query: 608 C 606
C
Sbjct: 172 C 172
Score = 50.8 bits (116), Expect = 2e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 681
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 3e-09
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 612
C+ C GHI ++C ++ D S C+ C H C + G + C+ C+++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENGHLSG 137
Query: 611 NCPDGTK-------TCYVCGKPGHISRECDE 540
C K C C H++++CD+
Sbjct: 138 QCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -1
Query: 755 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 588
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 587 CYVCGKPGHISRECDE 540
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 654
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 593 KTCYVCGKPGHISRECDEARN 531
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 546
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 545 DEAR 534
E R
Sbjct: 141 SEPR 144
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRESATQTCYNCNKSGHISR 612
C+ C G GHI+++C C C HI+ CP T+ C NC GHI+
Sbjct: 89 CHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------WTKKCMNCGLLGHIAA 138
Query: 611 NCPD----GTKTCYVCGKPGHISREC 546
C + G + C C H S C
Sbjct: 139 RCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 674 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISREC 546
G S + C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
Score = 34.7 bits (76), Expect = 0.016
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 618
+C C GHIA C++ C C+ H + CP R Y K +
Sbjct: 126 KCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWR-------YYVEKEHPV 178
Query: 617 SRNCPDGTKTCYVCGKPGHISREC 546
+ + K CY C H +C
Sbjct: 179 RIDVSEVRKFCYNCASDEHFGDDC 202
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 3e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 603
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 516
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEP 726
C C GHIAR+C +P
Sbjct: 336 CRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 623 HISRNCPDGTKTCYVCGKPGHISREC 546
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 623 HISRNCPDGTKTCYVCGKPGHISREC 546
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.34
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -1
Query: 686 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 576
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 743 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 573
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 671 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 567
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 743 QSPDEPSCYNCNKTGHIARN--CPEGGR 666
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +2
Query: 638 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 802
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 803 P 805
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 755 RECAQSPDEPS-----CYNCNKTGHIARNCP 678
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGTKTCYVCGKP 567
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 163 HGTPASNLSFDKKICTKYIKYILCNAKNCNATPSIVQ 273
HG P S +S K+C + + N +N A PS+V+
Sbjct: 210 HGQPESTMSRKPKLCVQ--SKSMTNIRNSVAKPSLVR 244
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 362 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 460
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 323 KNKHERASTRPSIYKSTVEPHSS 391
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 674 GGRESATQTCYNCNKSG 624
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 605 PDGTKTCYVCGKPGHISRECDEARN 531
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 638 SYSRSASQTPAPPRDSSVRCGPSCCSCN 721
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,090
Number of Sequences: 5004
Number of extensions: 58866
Number of successful extensions: 223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -