Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n11
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 81 7e-16
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 62 6e-10
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 62 6e-10
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 58 6e-09
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 58 6e-09
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 58 6e-09
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 58 7e-09
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 58 7e-09
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 58 7e-09
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 43 2e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 43 2e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 43 2e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 43 2e-04
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 40 0.002
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 40 0.002
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 40 0.002
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 39 0.004
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 38 0.011
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 38 0.011
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.015
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 36 0.045
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 34 0.10
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 34 0.10
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 34 0.10
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 34 0.14
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 33 0.18
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 33 0.32
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 32 0.56
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 32 0.56
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 31 0.73
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF026207-2|AAK71372.1| 233|Caenorhabditis elegans Hypothetical ... 30 2.2
Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical p... 29 3.0
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 3.0
Z81496-9|CAB04065.1| 153|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 3.9
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 29 3.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 3.9
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z82055-2|CAB04844.1| 369|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 5.2
AL110477-14|CAB54336.2| 224|Caenorhabditis elegans Hypothetical... 29 5.2
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 5.2
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 5.2
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 29 5.2
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 6.8
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 28 6.8
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 28 6.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 6.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 6.8
Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical pr... 28 9.0
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 81.4 bits (192), Expect = 7e-16
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 37/132 (28%)
Frame = -1
Query: 797 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIARNCPEGGRESATQ- 651
+DR CY+C GHI+R C + +CYNC +TGH +R+CP+GG +
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRG 61
Query: 650 ------TCYNCNKSGHISRNCPD--------------------GTKTCYVCGKPGHISRE 549
+CYNC GH SR+CP G + CY CG+ GHISRE
Sbjct: 62 GGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 548 CDEARN*PQPPC 513
C E+ + + C
Sbjct: 122 CTESGSAEEKRC 133
Score = 79.8 bits (188), Expect = 2e-15
Identities = 45/115 (39%), Positives = 54/115 (46%), Gaps = 29/115 (25%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEP----------SCYNCNKTGHIARNCP----EGG------ 669
CY C TGH +R+C + SCYNC GH +R+CP EGG
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGG 96
Query: 668 -----RESATQTCYNCNKSGHISRNCPDG----TKTCYVCGKPGHISRECDEARN 531
R Q CYNC +SGHISR C + K CY C + GHISR+C N
Sbjct: 97 RGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQ--SPDEPSCYNCNKTGHIARNCP 678
+CY C +GHI+REC + S +E CY C +TGHI+R+CP
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 800 EADRCYRCNGTGHIAREC 747
E RCY+C TGHI+R+C
Sbjct: 129 EEKRCYQCQETGHISRDC 146
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 615
C+ C GHI++EC P P C NC + GH A +C + C NC GH +
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGIEGHFA 628
Query: 614 RNCPDGTKT----CYVCGKPGHISREC--DEARN*PQPPC 513
+C D K C CG+ GH +++C + R P PC
Sbjct: 629 VDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 615
C C GH A +C Q P P C NC GH A +C + + C NC + GH +
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGP-CRNCGIEGHFAVDCDQP--KVPRGPCRNCGQEGHFA 651
Query: 614 RNCP------DGTKTCYVCGKPGHISREC 546
++C + T+ C C + GH EC
Sbjct: 652 KDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCP-EGGRESATQTCYNCNKSGHI 618
C C GH A +C Q P P C NC + GH A++C E R T+ C C + GH
Sbjct: 618 CRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHW 676
Query: 617 SRNCPDGTK 591
CP K
Sbjct: 677 GYECPTRPK 685
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 587 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 495
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 61.7 bits (143), Expect = 6e-10
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 615
C+ C GHI++EC P P C NC + GH A +C + C NC GH +
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PRVPRGPCRNCGIEGHFA 628
Query: 614 RNCPDGTKT----CYVCGKPGHISREC--DEARN*PQPPC 513
+C D K C CG+ GH +++C + R P PC
Sbjct: 629 VDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHIS 615
C C GH A +C Q P P C NC GH A +C + + C NC + GH +
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGP-CRNCGIEGHFAVDCDQP--KVPRGPCRNCGQEGHFA 651
Query: 614 RNCP------DGTKTCYVCGKPGHISREC 546
++C + T+ C C + GH EC
Sbjct: 652 KDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCP-EGGRESATQTCYNCNKSGHI 618
C C GH A +C Q P P C NC + GH A++C E R T+ C C + GH
Sbjct: 618 CRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHW 676
Query: 617 SRNCPDGTK 591
CP K
Sbjct: 677 GYECPTRPK 685
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 587 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 495
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEG---GRES 660
KE R CY C GH +R+C + P E S + G EG E
Sbjct: 391 KEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEER 450
Query: 659 ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE-----GGRESATQT 648
E + C+ C GH + +C + E CYNC + GH +R+CPE GR T
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSG 427
Query: 647 CYNCNKSGH-------ISRNCPDGTKTCYVCGKPGHISRECDE 540
N G N G C+ C GH S EC E
Sbjct: 428 FGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R+CPE + + +
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGG 313
Query: 632 KSG 624
SG
Sbjct: 314 SSG 316
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEG---GRES 660
KE R CY C GH +R+C + P E S + G EG E
Sbjct: 391 KEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEER 450
Query: 659 ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE-----GGRESATQT 648
E + C+ C GH + +C + E CYNC + GH +R+CPE GR T
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSG 427
Query: 647 CYNCNKSGH-------ISRNCPDGTKTCYVCGKPGHISRECDE 540
N G N G C+ C GH S EC E
Sbjct: 428 FGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R+CPE + + +
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGG 313
Query: 632 KSG 624
SG
Sbjct: 314 SSG 316
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 58.4 bits (135), Expect = 6e-09
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHIARNCPEG---GRES 660
KE R CY C GH +R+C + P E S + G EG E
Sbjct: 391 KEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEER 450
Query: 659 ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE-----GGRESATQT 648
E + C+ C GH + +C + E CYNC + GH +R+CPE GR T
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSG 427
Query: 647 CYNCNKSGH-------ISRNCPDGTKTCYVCGKPGHISRECDE 540
N G N G C+ C GH S EC E
Sbjct: 428 FGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 668 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
R C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R+CPE + + +
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGG 313
Query: 632 KSG 624
SG
Sbjct: 314 SSG 316
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 629 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 519
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGR 666
KE R CY C GH +REC + P E N GG
Sbjct: 178 KEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGE 237
Query: 665 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 238 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 55.2 bits (127), Expect = 5e-08
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 674 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 678
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.1 bits (92), Expect = 0.001
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R C E + +T
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGG 214
Query: 632 KSGHISRNCPDG--------------TKTCYVCGKPGHISRECDE 540
+G + DG C+ C GH S EC E
Sbjct: 215 GAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 587 CYVCGKPGHISRECDEARN*PQP 519
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGR 666
KE R CY C GH +REC + P E N GG
Sbjct: 178 KEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGE 237
Query: 665 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 238 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 55.2 bits (127), Expect = 5e-08
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 674 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 678
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.1 bits (92), Expect = 0.001
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R C E + +T
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGG 214
Query: 632 KSGHISRNCPDG--------------TKTCYVCGKPGHISRECDE 540
+G + DG C+ C GH S EC E
Sbjct: 215 GAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 587 CYVCGKPGHISRECDEARN*PQP 519
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Frame = -1
Query: 806 KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCPE----------GGR 666
KE R CY C GH +REC + P E N GG
Sbjct: 178 KEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGE 237
Query: 665 ESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 546
E C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 238 ERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 55.2 bits (127), Expect = 5e-08
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC + GH + +CPE +E + CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 674 GGRESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 534
GG E C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 678
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
Score = 41.1 bits (92), Expect = 0.001
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRESATQTCYNCN 633
E + C+ C GH + +C + E CYNC + GH +R C E + +T
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGG 214
Query: 632 KSGHISRNCPDG--------------TKTCYVCGKPGHISRECDE 540
+G + DG C+ C GH S EC E
Sbjct: 215 GAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 587 CYVCGKPGHISRECDEARN*PQP 519
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQ---SPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNCNKSGH 621
C+ C GH +C + S + C+ C H C + G + TC+ C + GH
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGH 290
Query: 620 ISRNC--------PDGTKTCYVCGKPGHISRECDE 540
ISR+C PDG C VCG H+ R+C E
Sbjct: 291 ISRDCHQNVNGVYPDG-GCCNVCGANTHLRRDCPE 324
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC-PDGTK-----TCYVCGKPG 564
+C++C + GH +CP+ S+ C+ C H C G K TC+VC + G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 563 HISRECDEARN 531
HISR+C + N
Sbjct: 290 HISRDCHQNVN 300
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 680 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 519
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 791 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 663
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 156
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 680 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 519
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 791 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 663
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 680 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 519
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 791 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 663
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 680 PEGGRESATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 519
P G +++ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 791 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 663
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 656 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 516
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC K GH A C RE C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 642
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 656 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 516
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 591
+C+NC K GH A C RE C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 642
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 743 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 567
Q+P + C +C + G C + +++A+Q C C +SG H++ + C+ C +
Sbjct: 625 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 683
Query: 566 GHISREC 546
GHI+ C
Sbjct: 684 GHIAWNC 690
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCNKS 627
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 628 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 683
Query: 626 GHISRNCP 603
GHI+ NCP
Sbjct: 684 GHIAWNCP 691
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 675
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 653 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 692
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS 723
C+RCN GHIA C + + S
Sbjct: 677 CFRCNEMGHIAWNCPKKNENTS 698
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 743 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 567
Q+P + C +C + G C + +++A+Q C C +SG H++ + C+ C +
Sbjct: 528 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 586
Query: 566 GHISREC 546
GHI+ C
Sbjct: 587 GHIAWNC 593
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCNKS 627
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 531 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 586
Query: 626 GHISRNCP 603
GHI+ NCP
Sbjct: 587 GHIAWNCP 594
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 675
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 556 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 595
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS 723
C+RCN GHIA C + + S
Sbjct: 580 CFRCNEMGHIAWNCPKKNENTS 601
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -1
Query: 743 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG-HISRNCPDGTKTCYVCGKP 567
Q+P + C +C + G C + +++A+Q C C +SG H++ + C+ C +
Sbjct: 539 QNPSD-RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEM 597
Query: 566 GHISREC 546
GHI+ C
Sbjct: 598 GHIAWNC 604
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQ-SPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCNKS 627
+DRC C G C++ S D S C C ++G +C + + C+ CN+
Sbjct: 542 SDRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASC----FKLKNRACFRCNEM 597
Query: 626 GHISRNCP 603
GHI+ NCP
Sbjct: 598 GHIAWNCP 605
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 797 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 675
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 567 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 606
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPS 723
C+RCN GHIA C + + S
Sbjct: 591 CFRCNEMGHIAWNCPKKNENTS 612
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPE-GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRE 549
+C+NC++ GH A CP G+ Q ++ I TCY CG+ GH +
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 548 C 546
C
Sbjct: 265 C 265
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 800 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 621
+A C+ C+ GH A C P + N + + + + + TCY C + GH
Sbjct: 202 QAITCHNCHERGHKATTCPHLPGQTR-QNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGH 260
Query: 620 ISRNCPDG 597
+ C G
Sbjct: 261 YANRCHKG 268
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEGGRESATQTCY 642
+CY C + GH A C +G + T +
Sbjct: 251 TCYKCGEKGHYANRCHKGALAFLSNTAH 278
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 606
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 672
RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 546
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 606
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 791 RCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 672
RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 35.1 bits (77), Expect = 0.060
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 546
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.015
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 653 QTCYNCNKSGHISRNCPDG 597
+ CY C + GHISRNCP+G
Sbjct: 4 RNCYKCQQPGHISRNCPNG 22
Score = 35.5 bits (78), Expect = 0.045
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 725 SCYNCNKTGHIARNCPEG 672
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 593 KTCYVCGKPGHISREC 546
+ CY C +PGHISR C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 624
CY+C GH++++C QS N KT H N E G T N G
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLNVEG 366
Score = 32.3 bits (70), Expect = 0.42
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 728 PSCYNCNKTGHIARNCPEGGRES 660
P CY C GH++++CP+ S
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGT 594
CY C GH+S++CP +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCG-PSCCSCNTTARPGSVRTRALCAPC 772
C S G CG+TCC APP S CG P C C V T C C
Sbjct: 66 CGCGSMGMCGQTCC--------PSAPPPCS---CGTPGCMQCVQQTVLVPVTTTTCCKCC 114
Query: 773 RYICSN 790
+ +C+N
Sbjct: 115 QPVCTN 120
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 609
C +C+GT + + SC CN TG +++ +GG T TC C SGH ++N
Sbjct: 191 CLKCHGT-----QVEPGHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 609
C +C+GT + + SC CN TG +++ +GG T TC C SGH ++N
Sbjct: 191 CLKCHGT-----QVEPGHKKTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Frame = +2
Query: 599 RRDSCGRCGRTCCSYSRSASQ-TPAPPRDSSVRC-GPSC---CS--CNTTARPGSVRTRA 757
RR CGR +CCS S S S P C P C CS CN ++ +
Sbjct: 31 RRQCCGRSSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQQQCSNQCNQQCTSITISSGP 90
Query: 758 LCAPCRYICSNGQPLP 805
C+ C+ CS+ P
Sbjct: 91 SCSSCQSACSSACTTP 106
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 33.5 bits (73), Expect = 0.18
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Frame = -1
Query: 800 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR--ESATQTCYNCNKS 627
E D + C G H ++C + C C + R CP G +S T C
Sbjct: 432 ECDGMFSC-GIHHCTKKC----HDKECGECETGANRIRTCPCGRNTLQSLGVTRKKCTDM 486
Query: 626 GHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQPPC 513
+ D TC GK H +C E P PPC
Sbjct: 487 VPTCDSVCDKWLTCGTPGKNHHCREKCHEG---PCPPC 521
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 761 IARECAQ--SPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 597
+ R+C Q +P + C+ C++ GH +CP+ + + N + R+ G
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSG 1398
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 31.9 bits (69), Expect = 0.56
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = -3
Query: 693 RTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVL-RVRQARPHLARVRRGAELAAAT 517
RT L R G + ++V LP SR +DV+ + RQA P + RRG +++
Sbjct: 643 RTTLPRSGTAQWKNEYSDGEEVTEKLPVESRDWRDVINQQRQAAPGNSADRRGIAATSSS 702
Query: 516 LSPLQSTMYIMMPRTDDKQRTPRATHDNRLQYRCRAASAPQTEE 385
LS L S YI R +K+R + +Y A P E
Sbjct: 703 LSNLPS--YI--NRRMEKEREREIEYRRDREYSMPPADPPVITE 742
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -1
Query: 737 PDEPSCYNCNKTGHIARNC---PEGG-RESATQTCYNCNKSGHISRNCP 603
P+ C C + G +C P+ RE C+ C + GHIS CP
Sbjct: 576 PENGICAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCP 624
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = -1
Query: 788 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 675
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 611 CGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCAP 769
C +C TC ++ Q AP ++ P C C TT + + + CAP
Sbjct: 174 CQQCQNTCQQFAPVCQQQCAP--QCTISSAPQCQQCQTTCQQFAPVCQQQCAP 224
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CR C C RTCC + T P CG CC C R
Sbjct: 79 CRPKCCCTCCRTCCC---TRCCTCCRPCCCGCGCGCGCCGCGGGGR 121
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CR C C RTCC + T P CG CC C R
Sbjct: 82 CRPKCCCTCCRTCCC---TRCCTCCRPCCCGCGCGCGCCGCGGGGR 124
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 605 PD-GTKTCYVCGKPGHISRECDEAR 534
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 605 PD-GTKTCYVCGKPGHISRECDEAR 534
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 605 PD-GTKTCYVCGKPGHISRECDEAR 534
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>AF026207-2|AAK71372.1| 233|Caenorhabditis elegans Hypothetical
protein H42K12.2 protein.
Length = 233
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 626 RTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRA 757
RTCC SA+ P+ S + C P CNT AR ++R A
Sbjct: 149 RTCCGCVSSAASGPS---SSLILCFPGGRRCNTHARTEALRGTA 189
>Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical
protein F40D4.7 protein.
Length = 295
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 302 CVLNHLNNRD*TIDGVALQFLALQSIYLIYFVQIFLS 192
C N N D T++ VA LAL + +I+F + LS
Sbjct: 198 CKANKTKNNDATMNRVAANRLALIDVIIIFFFDVLLS 234
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGTKTCYVC 576
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 647 CYNCNKSGHISRNCP 603
C++C + GHISR CP
Sbjct: 170 CFHCQEHGHISRMCP 184
Score = 28.3 bits (60), Expect = 6.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 722 CYNCNKTGHIARNCPE 675
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 647 CYNCNKSGHISRNCPDGTKTCYVC 576
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>Z81496-9|CAB04065.1| 153|Caenorhabditis elegans Hypothetical
protein F09C6.10 protein.
Length = 153
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/76 (22%), Positives = 26/76 (34%)
Frame = -1
Query: 779 CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 600
C + E P +P C N+ + C G + T CN+ +I N
Sbjct: 36 CQSKCGVPLEIRMKPTKPGCKKWNECDDNEKQCASGPKLQIIYTNNVCNQFVNICENREY 95
Query: 599 GTKTCYVCGKPGHISR 552
CG P +S+
Sbjct: 96 ANWNMQKCGIPHVVSK 111
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CR C C RTCC +R + CG CC C R
Sbjct: 77 CRPKCCCTCCRTCCC-TRCCTCCRPCCCGCGCGCGCGCCGCGGGGR 121
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CRR C C RTCC + T P CG CC C R
Sbjct: 95 CRR--CCTCCRTCCC---TRCCTCCRPCCCGCGCGCGCCGCGGGGR 135
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CRR C C RTCC + T P CG CC C R
Sbjct: 96 CRR--CCTCCRTCCC---TRCCTCCRPCCCGCGCGCGCCGCGGGGR 136
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 596 CRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTAR 733
CRR C C RTCC + T P CG CC C R
Sbjct: 96 CRR--CCTCCRTCCC---TRCCTCCRPCCCGCGCGCGCCGCGGGGR 136
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 696
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>Z92828-7|CAE48500.1| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 755 RECAQSPDEPSCYN-CNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTC 585
+ C S D +C + C+ I + P + Q+ Y C+ + CP+ K C
Sbjct: 78 KSCVASDDRETCEDSCHYLQRIYQEKPGACPSVSNQSNYECSALCQMDGECPETQKCC 135
>Z82055-2|CAB04844.1| 369|Caenorhabditis elegans Hypothetical
protein T26H2.2 protein.
Length = 369
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 130 GRSRSSLLIQTHGTPASNLSFDK-KICTKYIKYILCNAKNCNATPSI 267
G SR ++ +G P L +D K +KY C+AK TP +
Sbjct: 174 GVSRKAIRDLFNGVPILQLIYDSDKFPNNVLKYTSCHAKQAKITPGL 220
>Z81561-2|CAB04551.2| 700|Caenorhabditis elegans Hypothetical
protein K03D10.1 protein.
Length = 700
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 755 RECAQSPDEPSCYN-CNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTC 585
+ C S D +C + C+ I + P + Q+ Y C+ + CP+ K C
Sbjct: 78 KSCVASDDRETCEDSCHYLQRIYQEKPGACPSVSNQSNYECSALCQMDGECPETQKCC 135
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 767 GHIARECAQSPDEPSCYNCNKTGH----IARNCPE 675
GH R+C D P Y C K G I +NCP+
Sbjct: 55 GHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>AL110477-14|CAB54336.2| 224|Caenorhabditis elegans Hypothetical
protein Y113G7B.24 protein.
Length = 224
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = -3
Query: 696 HRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQDVLRVRQARPHL---ARVRRGAELA 526
HR EL R G D LQ++ + +H+ R + + L + ++ E A
Sbjct: 80 HRVELQRIGFITSDYVRCRLQKIESNPHDAIDQHKK--RKEEGKSDLLSESEMKFAEEYA 137
Query: 525 AATLSPLQSTMYIMMPRTDDKQRTPRATHDNRLQY 421
A + Q T+ MP K PR HD+ + Y
Sbjct: 138 LAESNLFQKTVLEFMPAALKKMPVPRGDHDDVMVY 172
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 587 CYVCGKPGHISREC 546
CY CGK GH + EC
Sbjct: 411 CYYCGKRGHTANEC 424
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = -1
Query: 722 CYNCNKTGHIARN--CP-----EGGRESATQT--CYNCNKSGHISRNCPDGTKTCYVCGK 570
C C+ T H+ R+ CP E + A + C+ C +SGH C +TC C K
Sbjct: 314 CIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKC-SRPRTCNHC-K 371
Query: 569 PGHISREC 546
H + C
Sbjct: 372 GNHHTVFC 379
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 599 RRDSCGRCGRTCCSYSRSASQTPAP-PRDSSVR-CGPSCCSCNTTARPGSVRTRALCAPC 772
R+ C R G S + SQ+P R+ + R CG SC TT RP + + + C
Sbjct: 88 RQAQCSRPGTGFGSSTPFPSQSPQRCGRNETFRTCGSSCEPSCTTPRPQACTMQCIVNVC 147
Query: 773 RYICSNG 793
+ CS G
Sbjct: 148 Q--CSEG 152
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 671 GRESATQTCYNCNKSGHISRNCP 603
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 671 GRESATQTCYNCNKSGHISRNCP 603
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 608 SCGRCGRTCC-SYSRSASQTPAPPRDSSVRCGPSCC-SCNTTA---RPGSVRTRALC-AP 769
S +C TC S S+ TP P + V+C PSC +C + P +V+ C
Sbjct: 101 SVSQCQSTCQQSCQTSSCYTPTTP--APVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQ 158
Query: 770 CRYICSNGQPL 802
C+ C QP+
Sbjct: 159 CQQQCVQTQPI 169
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 636
E C +CNG ++ + P+ CY C N G +C G + C +C
Sbjct: 1932 ESCSPC-QCNGNNNLTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
Query: 635 NKSGHISRNCPDGTKTC 585
S S+ C + + C
Sbjct: 1991 ECSQCGSQYCDNKSGGC 2007
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 636
E C +CNG ++ + P+ CY C N G +C G + C +C
Sbjct: 1932 ESCSPC-QCNGNNNLTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
Query: 635 NKSGHISRNCPDGTKTC 585
S S+ C + + C
Sbjct: 1991 ECSQCGSQYCDNKSGGC 2007
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = +2
Query: 617 RCGRTCCSYSRSASQTPAPPRDSSVRCGPSCC-SCNTTARPGSVRTRALCAP-CRYICSN 790
+C C ++ PP SS C SC C A C P C+ CS+
Sbjct: 292 KCSSQCVEQQQAQIVVVQPPTSSSNNCASSCMPQCTPQCVQQQTICAAACQPSCQSSCSS 351
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 683 CPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEARN 531
CP ++ QTC + + R C + + C +C P HI+ C A++
Sbjct: 925 CPPCKKDHPLQTC--TMGAIEVKRFCINNGR-CTICSSPSHITGNCSYAQS 972
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 636
E C +CNG ++ + P+ CY C N G +C G + C +C
Sbjct: 1932 ESCSPC-QCNGNNNLTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
Query: 635 NKSGHISRNCPDGTKTC 585
S S+ C + + C
Sbjct: 1991 ECSQCGSQYCDNKSGGC 2007
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = -1
Query: 803 EEADRCYRCNGTGHIARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 636
E C +CNG ++ + P+ CY C N G +C G + C +C
Sbjct: 1932 ESCSPC-QCNGNNNLTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
Query: 635 NKSGHISRNCPDGTKTC 585
S S+ C + + C
Sbjct: 1991 ECSQCGSQYCDNKSGGC 2007
>Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical
protein T24H10.1 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 611 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 697
CG+CG+ C+Y++ +++ P + V C
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFC 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,418
Number of Sequences: 27780
Number of extensions: 375922
Number of successful extensions: 1684
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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