Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17n09
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    60   5e-10
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    36   0.006
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   4.5  

>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
 Frame = -1

Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
           LDL   ESV Q A++      + L +L+ NAG+   P+  T+D  E   Q N+LSH  F 
Sbjct: 100 LDLLDFESVYQAAESF-IAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFT 158

Query: 627 LLLERLLKRGS--------RVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSK 472
            LL   L+R +        R+V V+S ++  A  + I+   +L +          Y  SK
Sbjct: 159 ELLLPTLRRTAEECRPGDVRIVHVASIAYLQAPYSGIYF-PDLNLPHVLLGTFARYGQSK 217

Query: 471 LYNVITAKMLSEKWKAKGICVNSLHPGNMVSTNLSK 364
              ++ +  L+++ +  GI   SLHPG ++ T L++
Sbjct: 218 YAQILYSIALAKRLEKYGIYSVSLHPG-VIRTELTR 252


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
 Frame = -1

Query: 813 IYLDLASLESVKQCAQAVETVFSDHLDMLILNAGV---FGLPYTETQDKLETTFQVNHLS 643
           I LD++SLES  + AQ V       +D+L +N+G+   F        D   + ++ N L 
Sbjct: 59  IKLDISSLESANEAAQEVAKAVG-KVDVLWVNSGIFHSFNTVLNTPDDVWNSHYKTNVLG 117

Query: 642 HMYFALLLERLLKRGSRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKLYN 463
            ++       L+K+G   + V + S         F   N             Y  SK   
Sbjct: 118 PIHVYQAFYPLVKKGESKIIVFTSS--LVGSMGAFFPFN----------QSGYGQSKAAL 165

Query: 462 VITAKMLSEKWKAKGICVNSLHPGNMVSTN 373
             T K +S + + +G  V S+HPG MV T+
Sbjct: 166 NFTMKEISFELQDEGFIVISIHPG-MVRTD 194


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 34  YKNNSVQS--SYHNYARFYFIYNVRQYFTNYP*SCLRDIFDQPKRHVVD 174
           + NN+V +  ++H     YF YN  Q+FT +   C    + QP + + D
Sbjct: 246 FSNNAVVNGAAHHAAHHMYFNYNYGQFFTLFDRLC--SSYRQPDQELFD 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,777
Number of Sequences: 5004
Number of extensions: 68528
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)