Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n09
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0352 + 2799748-2799865,2800368-2800412,2800890-2801121,280... 104 1e-22
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166... 101 7e-22
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 96 3e-20
09_06_0350 + 22461592-22461935,22462788-22462867,22463171-224632... 93 3e-19
04_03_0215 + 12722394-12722581,12722992-12723071,12723315-127235... 82 6e-16
06_01_0199 + 1538124-1538485,1538997-1539076,1539198-1539357,153... 74 1e-13
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86... 73 2e-13
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406... 67 2e-11
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 67 2e-11
10_08_0835 - 20916364-20916462,20916503-20916549,20916750-209168... 58 1e-08
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989... 48 1e-05
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 44 2e-04
09_02_0572 - 10796997-10797152,10797259-10797412,10798023-107980... 42 5e-04
04_04_1598 + 34698260-34698316,34698438-34699544 42 5e-04
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 35 0.096
10_08_0832 - 20905189-20905347,20905793-20905877,20906385-20906458 31 0.89
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 30 2.1
07_03_1663 - 28449654-28451867 28 8.3
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 28 8.3
>01_01_0352 +
2799748-2799865,2800368-2800412,2800890-2801121,
2801242-2801321,2801417-2801570,2801655-2801733,
2801900-2801984,2802121-2802167,2802301-2802471
Length = 336
Score = 104 bits (249), Expect = 1e-22
Identities = 81/236 (34%), Positives = 123/236 (52%), Gaps = 11/236 (4%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
LDL+SL+SV+ A ++ + L++LI NAGV P+ ++D +E F NHL H
Sbjct: 106 LDLSSLKSVRAFADQFNSM-NLPLNILINNAGVMFCPFGLSEDGVEMQFATNHLGHFLLT 164
Query: 627 -LLLERLLKRG------SRVVFVSSESHRFANLTNI-FTNQNLAMTKDQYSAMMAYNNSK 472
LLL+ + R+V +SS +H I F N T Y MAY SK
Sbjct: 165 NLLLDNMKATAKSTGIEGRIVNLSSVAHLHTYPKGIEFDKLNDEKT---YDDKMAYGQSK 221
Query: 471 LYNVITAKMLSEKWKAKG--ICVNSLHPGNMVSTNLSK-SWWLYRLAFFLVRPFTKSLQQ 301
L N++ AK LS + K +G I +N +HPG ++ TNL + S++L R+ F KS+ Q
Sbjct: 222 LANILHAKELSRRLKEEGANITINCVHPG-LIMTNLMRHSFFLMRVLQFATYILWKSVPQ 280
Query: 300 XXXXXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLIEDISK 133
+L+GVTG YF +C + S AR+ +A+ +++ S +LI+ SK
Sbjct: 281 GAATTCYVGLNPQLKGVTGQYFADCNVEKTSRFARNDALAKQLWEFSEKLIKSSSK 336
>04_03_0214 +
12713865-12713973,12715780-12716011,12716556-12716635,
12716930-12717083,12717213-12717291,12717654-12717738,
12718420-12718466,12720123-12720281
Length = 314
Score = 101 bits (242), Expect = 7e-22
Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 10/230 (4%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
LDL+S+ SV++ A+ + + + L++LI NAGV +P+ ++D +E F NH+ H
Sbjct: 88 LDLSSMSSVRRFAEIFKAL-NLPLNILINNAGVCFVPFKLSEDDIELHFATNHIGHFLLT 146
Query: 627 -LLLERL----LKRGS--RVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKL 469
LL+E++ ++ G RVV V+S S+ + I ++ + Y+ +AY SKL
Sbjct: 147 DLLIEKMKVTAIESGKEGRVVIVASVSYSLSYPGGICFDK--INDESGYNRFLAYGQSKL 204
Query: 468 YNVITAKMLSEKWKAKG--ICVNSLHPGNMVSTNLSKSWW-LYRLAFFLVRPFTKSLQQX 298
N++ + +LS K + + VNSLHPG V+TN+ W LY + + F K ++Q
Sbjct: 205 ANILHSNLLSSHLKEQDAKVIVNSLHPG-AVATNILHHWCPLYGAIRAIGKYFVKGVEQG 263
Query: 297 XXXXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLI 148
++ GVTG YF++C E + A D ++A+ ++D SL I
Sbjct: 264 AATVCYVALHPQVAGVTGKYFSDCNITELKSHALDMDLAKRLWDFSLSQI 313
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 96.3 bits (229), Expect = 3e-20
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 29/248 (11%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
+DL+SL+SV+ A++ + + HL++LI NAGV P+ ++D +E F NH+ H
Sbjct: 93 MDLSSLDSVRSFAKSFNSSYR-HLNVLINNAGVMSCPFGLSKDGIELQFATNHVGHFLLT 151
Query: 627 -LLLERLLKRG------SRVVFVSSESHRFA-----NLTNIFTNQNLA------------ 520
LLL+++ R++ VSS SHR + +L + L
Sbjct: 152 NLLLDKMKATAKETGLQGRIINVSSISHRGSDGSCFDLDKLNDKSKLTQYSKLNQRSYYF 211
Query: 519 MTKDQYSAMMAYNNSKLYNVITAKMLSEKWKAKG--ICVNSLHPGNMVSTNLSKSWWLYR 346
+ +Y AY +SKL N++ A LS +++ +G + NSLHPG +++TNL +
Sbjct: 212 IKLGRYRPFKAYGHSKLANILHANELSRRFQEEGCNLTANSLHPG-VIATNLPRHILTNS 270
Query: 345 L---AFFLVRPFTKSLQQXXXXXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQA 175
L F +++PF KS+ Q L+ V+G YF +C +A+ARD E+A+
Sbjct: 271 LIISIFSVMKPFLKSIPQGAATNCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAKK 330
Query: 174 VYDMSLRL 151
+++ S L
Sbjct: 331 LWEFSEEL 338
>09_06_0350 +
22461592-22461935,22462788-22462867,22463171-22463273,
22463423-22463501,22464208-22464292,22464639-22464685,
22465217-22465375
Length = 298
Score = 93.1 bits (221), Expect = 3e-19
Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 2/222 (0%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
LDLAS++SV+ A L++LI NAGV P++ ++D +E F NH+ H
Sbjct: 89 LDLASMDSVRAFASDFAAKGLP-LNILINNAGVMATPFSLSKDGIELQFATNHVGHFLLT 147
Query: 627 LLLERLLKRGSRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKLYNVITAK 448
LL +K+ SR ES+ + N+ + + +Y+++ AY SKL N++ A
Sbjct: 148 HLLLETMKKTSR------ESNVEGRIVNVSSEGH------RYNSIGAYGQSKLANILHAN 195
Query: 447 MLSEKWKAKGICV--NSLHPGNMVSTNLSKSWWLYRLAFFLVRPFTKSLQQXXXXXXXXX 274
L+ ++K +G+ + NSLHPG++++ L L L L + K+ QQ
Sbjct: 196 ELARRFKDEGVNITANSLHPGSIITNLLRHHSILDVLHRTLGKLVLKNAQQGAATTCYVA 255
Query: 273 XASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLI 148
+++GV+G YF++ E S D E+A+ +++ S+ LI
Sbjct: 256 LHPQVKGVSGKYFSDSNVNEASEKGNDMELAKRLWEYSIELI 297
>04_03_0215 +
12722394-12722581,12722992-12723071,12723315-12723532,
12724084-12724168,12724679-12724725,12725378-12725536
Length = 258
Score = 81.8 bits (193), Expect = 6e-16
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
LDL+ + SV++ A+ + + L++L+ NAG+ +P+ +++ +E F NHL H
Sbjct: 37 LDLSLMSSVRRFAENFNAL-NLPLNILVNNAGIAFVPFKLSEEGIELHFSTNHLGHFLLT 95
Query: 627 -LLLERL----LKRG--SRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKL 469
LLLE++ ++ G RVV V+S S++ I ++ D+ L
Sbjct: 96 DLLLEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDK----INDESGYYFLTQRILL 151
Query: 468 YNVITAKMLSEKWKAKGICVNSLHPGNMVSTNLSKSWWLYR-LAFFLVRPFTKSLQQXXX 292
+ + S++ AK + VNSLHPG +V TN+ + W+ + L + F K ++Q
Sbjct: 152 FTFVYLFNRSKEQDAK-VTVNSLHPGAVV-TNIMRHWYFVNGMLSTLGKFFVKGVEQGAA 209
Query: 291 XXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLI 148
++ GVTG YF +C E + A D +A+ ++D SL LI
Sbjct: 210 TVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 257
>06_01_0199 +
1538124-1538485,1538997-1539076,1539198-1539357,
1539497-1539578,1540080-1540167,1540256-1540302,
1540623-1540865
Length = 353
Score = 74.1 bits (174), Expect = 1e-13
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 12/228 (5%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
LDL+SL SV++ A A L++LI NAG F + + D +E TF N+L H
Sbjct: 95 LDLSSLASVRRFA-ARFLALGLPLNLLINNAGKFADRFALSDDGVEMTFATNYLGHFLLT 153
Query: 627 -LLLERLLKRGS------RVVFVSSESHR-FANLTNIFTNQNLAMTKDQYSAMMAYNNSK 472
LL+E++ + + R+V VSS H FA + + K Y AY SK
Sbjct: 154 KLLMEKMAETAAATGVEGRIVNVSSTIHSWFAGDDAVGYIDAVTRRKIPYDPTRAYALSK 213
Query: 471 LYNVITAKMLSEKWK--AKGICVNSLHPGNMVSTNL--SKSWWLYRLAFFLVRPFTKSLQ 304
L NV+ + L+++ K + N +HPG +V T L + + FFL K++
Sbjct: 214 LANVLHTRALADRLKEMKANVTANCVHPG-IVRTRLIRERDGLVTNTVFFLASKLLKTIP 272
Query: 303 QXXXXXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMS 160
Q + GV+G YF +C S L + + A ++ S
Sbjct: 273 QAAATTCYVAVHPAVAGVSGKYFADCNEASPSRLGSNADEAAKLWRFS 320
>03_01_0109 -
863381-863575,863749-863795,863893-863980,864078-864159,
864264-864420,864501-864583,864724-864955,865032-865146
Length = 332
Score = 73.3 bits (172), Expect = 2e-13
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTE-TQDKLETTFQVNHLSHMYF 631
LDL+SL SV+ A ++ L +LI NAG F ++D +E TF N+L H
Sbjct: 90 LDLSSLASVRAFADRFLSLGLP-LHLLINNAGKFSHGQLALSEDGVEMTFATNYLGHFLL 148
Query: 630 A-LLLERLLKRGS------RVVFVSSESHRF-----ANLTNIFTNQNLAMTKDQYSAMMA 487
LLL R+ + + R+V VSS H + A ++ T + +A Y A A
Sbjct: 149 TKLLLGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDLVTRRKIA-----YDATQA 203
Query: 486 YNNSKLYNVITAKMLSEKWKAKG--ICVNSLHPGNMVSTNLS--KSWWLYRLAFFLVRPF 319
Y SKL NV+ K L+ + K G + VN +HPG +V T L+ + + L F L+
Sbjct: 204 YAVSKLANVLHTKELAVRLKEMGANVTVNCVHPG-IVRTRLNRDRDGLVTDLVFLLLSKL 262
Query: 318 TKSLQQXXXXXXXXXXASELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMS 160
K++ Q L GV+G YF +C S A ++ A+ ++ +S
Sbjct: 263 LKTIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAERLWQIS 315
>11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,
4067706-4067822,4067898-4067958,4068042-4068133,
4068547-4068632,4068926-4068975,4069077-4069117,
4069222-4069392,4069875-4069942,4070088-4070148,
4070471-4070757,4072008-4072172,4072759-4072760,
4072829-4073139,4073600-4073787,4075231-4075482,
4076035-4076114,4076199-4076399,4076959-4077014,
4077137-4077328
Length = 980
Score = 66.9 bits (156), Expect = 2e-11
Identities = 59/221 (26%), Positives = 103/221 (46%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
+DLASL+SV++ A A ++ + HL++LI NAG+ G P+ ++D +E F NH+ H
Sbjct: 779 MDLASLDSVRRFATAFDSSHT-HLNILINNAGIMGCPFKLSKDGIELQFATNHVGHFLLT 837
Query: 627 LLLERLLKRGSRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKLYNVITAK 448
LL +K +R V R N+++I ++ D + N K + + +
Sbjct: 838 NLLLDKMKSTARKTGVQG---RIVNVSSIAHKRSDGSCFD-----LNKLNDKSRSAMCSF 889
Query: 447 MLSEKWKAKGICVNSLHPGNMVSTNLSKSWWLYRLAFFLVRPFTKSLQQXXXXXXXXXXA 268
+L + ++ + V+ L GN+ F K+ QQ
Sbjct: 890 LLLPRTLSQCVMVSILSVGNL---------------------FLKNTQQGAATTCYLALH 928
Query: 267 SELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLIE 145
EL+ V+G YF +C ARD E+A+ ++D S +L++
Sbjct: 929 PELKDVSGKYFADCKEATPRPAARDAELAKRLWDFSEQLVD 969
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 66.9 bits (156), Expect = 2e-11
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVF--GLPYTETQDKLETTFQVNHLSHMY 634
LDL SL+SV + A A + L +LI NAG+F G P ++D E QVNHL+
Sbjct: 142 LDLLSLDSVVKFADAWNARMAP-LHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAPAL 200
Query: 633 FALLLERLLKRG--SRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKLYNV 460
A+LL L RG SR+V V+S H + + NL K +++++M Y+NSKL +
Sbjct: 201 LAVLLLPSLLRGSPSRIVNVNSVMHTVGFVD--AEDMNLTSGKRKFTSLMGYSNSKLAQI 258
Query: 459 ITAKMLSEKWKAKG-ICVNSLHPGNMVSTNLSK 364
+ ML + A+ I V PG +V TN+++
Sbjct: 259 KFSSMLHRRIPAEAEINVICASPG-IVHTNVAR 290
>10_08_0835 -
20916364-20916462,20916503-20916549,20916750-20916864,
20916933-20917011,20917365-20917518,20917660-20917739,
20918170-20918401,20918755-20918860
Length = 303
Score = 57.6 bits (133), Expect = 1e-08
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 19/165 (11%)
Frame = -1
Query: 807 LDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFA 628
+DL+S++SV++ A E + + L++LI NAG+ T + D LE F NH+ H
Sbjct: 87 MDLSSMDSVRRFATEFEAL-NLPLNILINNAGIMTRNCTRSIDGLELQFATNHIGHFLLT 145
Query: 627 LLLERLLKRGS-------RVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKL 469
LL +KR S R+V VSS +H I ++ ++ +++AY SKL
Sbjct: 146 NLLLENMKRTSSKTGVEGRIVNVSSSAHFVTYPKGICFDK--VKEPSRFISLIAYGQSKL 203
Query: 468 YNVITAKMLS------------EKWKAKGICVNSLHPGNMVSTNL 370
N++ + LS E+ I N++HPG +V+TNL
Sbjct: 204 ANILHSTELSRVLKNNRETVEYEQEDGVNISANAVHPG-VVTTNL 247
>06_03_0618 +
22798419-22798588,22798672-22798771,22798891-22798971,
22799131-22799180,22799302-22799452,22800027-22800083,
22800171-22800292,22800397-22800601
Length = 311
Score = 48.0 bits (109), Expect = 1e-05
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Frame = -1
Query: 804 DLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTETQDKLETTFQVNHLSHMYFAL 625
DL+S+ VK A + L +L+ NAG+ T + LE F VN +
Sbjct: 93 DLSSISEVKSFATKFSST-DKPLHVLVNNAGLLEHKRVTTPEGLELNFAVNVAATYTLTE 151
Query: 624 LLERLLKRGS---RVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSKLYNVIT 454
L+ LL++ + RV+ VSS L N++L ++ + Y +K V
Sbjct: 152 LVMPLLEKAAPDARVITVSSGGMYTEPL-----NKDLQFGENNFDGTQQYARNKRVQVAL 206
Query: 453 AKMLSEKWKAKGICVNSLHPGNMVSTNLSKS 361
+ SEK KG+ S+HPG + +SKS
Sbjct: 207 TERWSEKCSNKGVGFYSMHPGWADTPGVSKS 237
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 43.6 bits (98), Expect = 2e-04
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 35/257 (13%)
Frame = -1
Query: 813 IYLDLASLESVKQCAQAVETVFSDHLDMLILNAGVFGLPYTE---TQDKLETTFQVNHLS 643
++LDLASL+SV+Q V + +D+++ NA V+ + T D E + VNHL
Sbjct: 140 VHLDLASLDSVRQFVANVRRL-EMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGVNHLG 198
Query: 642 HMYFAL-LLERLLKR---GSRVVFVSSESHRFANL-------TNIFTNQNLAMTKD---- 508
H A LL L R++ V S + L N+ + LA D
Sbjct: 199 HFLLARELLADLTSSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLASGLDGVSS 258
Query: 507 -------QYSAMMAYNNSKLYNVITAKMLSEKWKAK-GICVNSLHPGNMVSTNLSKSWW- 355
++ AY +SK+ N++T + ++ + G+ SL+PG + +T L +
Sbjct: 259 SAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFASLYPGCIATTGLFREHVP 318
Query: 354 LYRLAF-----FLVRPFTKSLQQXXXXXXXXXXAS-ELEGVTGLYFNN--CFYCEESALA 199
L+RL F ++ + + + S GV + NN F + S A
Sbjct: 319 LFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEA 378
Query: 198 RDKEIAQAVYDMSLRLI 148
D E A+ V+++S +L+
Sbjct: 379 SDPEKAKKVWELSEKLV 395
>09_02_0572 -
10796997-10797152,10797259-10797412,10798023-10798065,
10798470-10798588,10798718-10798926,10799534-10799583,
10799610-10799718
Length = 279
Score = 42.3 bits (95), Expect = 5e-04
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Frame = -1
Query: 819 KSIYLDLASLESVKQCAQAVETVFSDH-----LDMLILNAGVFGLPYTETQDKLETTFQV 655
++ +DL+S +S+K+ ++ D + +L+ NAG+ Y T+D L+ Q
Sbjct: 68 EAFQIDLSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGILAKSYRITEDGLDEMIQA 127
Query: 654 NHLSHMYFALLLERLLKRG---SRVVFVSSESHRFANLTNI 541
N++ +L LLK SRVV ++S +HR + N+
Sbjct: 128 NYIGPFVLTNILLPLLKNSSTPSRVVNLTSFTHRCVSEINL 168
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 42.3 bits (95), Expect = 5e-04
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%)
Frame = -1
Query: 813 IYLDLASLESVKQCAQAVETVFSDHLDMLILNAGVF---GLPYTETQDKLETTFQVNHLS 643
++LDLASL+SV+Q LD L+ NA ++ T T D E + VNHL
Sbjct: 128 MHLDLASLDSVRQFVDNFRRSGMP-LDALVCNAAIYRPTARQPTFTADGYEMSVGVNHLG 186
Query: 642 HMYFA-LLLERLLKR---GSRVVFVSS---ESHRFA-------------NLTNIFTNQN- 526
H A L+L+ L K R++ + S ++ A L QN
Sbjct: 187 HFLLARLMLDDLKKSDYPSRRLIILGSITGNTNTLAGNVPPKAGLGDLRGLAGGLRGQNG 246
Query: 525 LAMT--KDQYSAMMAYNNSKLYNVITAKMLSEKW-KAKGICVNSLHPGNMVSTNLSKSWW 355
AM + + AY +SK+ N++T + ++ + GI SL+PG + +T L +
Sbjct: 247 SAMIDGAESFDGAKAYKDSKICNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHI 306
Query: 354 -LYRLAF-----FLVRPFTKSLQQXXXXXXXXXXASELEGVTGLYF-----NNCFYCEES 208
L+RL F F+ + F + S + +G+Y+ + F + S
Sbjct: 307 PLFRLLFPPFQRFVTKGFVSEAESGKRLAQVVGDPSLTK--SGVYWSWNKDSASFENQLS 364
Query: 207 ALARDKEIAQAVYDMSLRLI 148
A D E A+ ++D+S +L+
Sbjct: 365 QEASDPEKARKLWDLSEKLV 384
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 34.7 bits (76), Expect = 0.096
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = -1
Query: 651 HLSHMYFALLLERLLKRGSRVVFVSSESHRFANLTNIFTNQNLAMTKDQYSAMMAYNNSK 472
H+ FA L RG ++F H+F+ ++ + L M+KD ++ +++ +
Sbjct: 369 HIQEEEFASTFRVLEIRGYDIIFGCDWIHQFSPVSLNLKTKELTMSKDGHTLVLSDVSVP 428
Query: 471 LYNVITAKMLSEKWKAKGICVNSLH 397
+ N + + EKW +G+ LH
Sbjct: 429 VRNFLISMHKLEKWVDQGMAGTVLH 453
>10_08_0832 - 20905189-20905347,20905793-20905877,20906385-20906458
Length = 105
Score = 31.5 bits (68), Expect = 0.89
Identities = 11/39 (28%), Positives = 27/39 (69%)
Frame = -1
Query: 264 ELEGVTGLYFNNCFYCEESALARDKEIAQAVYDMSLRLI 148
+++G++G YF+NC S+ A + E+A+ +++ S +++
Sbjct: 66 QVKGISGKYFSNCNLDSPSSHASNAELAKKLWEFSSKVV 104
>04_04_0050 -
22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 463 CHNSKDVKRKMEGKRYMREF 404
CH+ ++ K MEGKR+ REF
Sbjct: 429 CHSCQEKKEAMEGKRHSREF 448
>07_03_1663 - 28449654-28451867
Length = 737
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 594 WNLVSTVAQVAVQNTCGLGD*LEK*SPVYLESLCMAGQIHPHSVLTCLNGQRKLF 758
+++V +A+ Q CG+ D ++SLC +GQ H S + + G+R ++
Sbjct: 217 FHIVFRIAEEMPQQRCGVADVFAY--SQMIDSLCRSGQHHGASRIVYIMGKRGMY 269
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 142 IFDQPKRHVVDGLCYFFVPCQRRLFAIETVVEVQSGD 252
IFD+ VVD + F PCQ+RL + ++ + D
Sbjct: 535 IFDEEYYPVVDYMFVFVPPCQQRLDKLSQILYLYDSD 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,561,010
Number of Sequences: 37544
Number of extensions: 397162
Number of successful extensions: 869
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -