Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17n08
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0150 - 2244757-2245303,2252925-2253277                           29   4.8  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   6.3  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    29   6.3  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    28   8.4  
03_05_0718 - 27100882-27100929,27101197-27101303,27101446-271015...    28   8.4  

>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 646 VLSNKPPMYSFLKEWFLLP 590
           V  + PP Y+FLKE FLLP
Sbjct: 4   VQRSTPPFYNFLKEGFLLP 22


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 742 CMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWF---LLPHYKV 578
           CM+  +   +   +I  ++  +F  P +G +  + N P +++ L  +F    +P+YKV
Sbjct: 469 CMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKV 526


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -3

Query: 466 VYDSLQELHEMGCV---LVL-WSYGSRDHVAHSMRDADLEGYFDII 341
           VYDSL+++  +  V   L L +SY S  HVAH     DL  Y D+I
Sbjct: 76  VYDSLKQICNIDVVPYSLTLGYSYWSAGHVAHLNIPDDLLPYKDVI 121


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 521 FGQHSHNRRGANSNSRFVCV*QLAGIARNGLRFSLVVVWQ 402
           F  + HNRR    NS+ V +  L+ +    + F + ++W+
Sbjct: 204 FSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWK 243


>03_05_0718 -
           27100882-27100929,27101197-27101303,27101446-27101593,
           27102195-27102328,27102608-27102929
          Length = 252

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 627 GGLLLSTHMWPNTGVLNARLILCLMSHMLSAGALNICIQ*L*LFSIILHRC-GVVAKLKY 803
           GG+ +S  +WP+ G   A  +L  M  M++   +++ I  L     +L    G  A  KY
Sbjct: 95  GGISVSDVLWPSAGAFLAMAVLGRMDQMMAYKGVSLTIAPLGAVCDVLFTAPGSPAAKKY 154

Query: 804 YIF 812
            +F
Sbjct: 155 NMF 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,192
Number of Sequences: 37544
Number of extensions: 508185
Number of successful extensions: 1186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)