Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n05
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC131534-1|AAI31535.1| 1386|Homo sapiens DEAH (Asp-Glu-Ala-Asp/H... 32 3.2
BC060778-1|AAH60778.2| 658|Homo sapiens DHX57 protein protein. 32 3.2
BC073962-1|AAH73962.1| 289|Homo sapiens Unknown (protein for IM... 31 4.3
BC031573-1|AAH31573.1| 710|Homo sapiens neuronal guanine nucleo... 31 4.3
AJ238899-1|CAC00686.1| 425|Homo sapiens guanine nucleotide exch... 31 4.3
AC016692-1|AAX93288.1| 582|Homo sapiens unknown protein. 31 4.3
D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein. 31 7.5
BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-co... 31 7.5
AK057423-1|BAB71479.1| 433|Homo sapiens protein ( Homo sapiens ... 31 7.5
AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled co... 31 7.5
>BC131534-1|AAI31535.1| 1386|Homo sapiens DEAH (Asp-Glu-Ala-Asp/His)
box polypeptide 57 protein.
Length = 1386
Score = 31.9 bits (69), Expect = 3.2
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = -1
Query: 784 VTLLQSLGERKCGFLLGKLYEMYQDKNLFTLPIMLSRKESNEI---ETASNNFFVSPYVS 614
+TLL+ E + LL + Y D + LP+ + +N NN FVS +
Sbjct: 412 ITLLEE--ESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINNPACHKTVIPNNSFVSNQIP 469
Query: 613 QILKYSESVKF-PDNPPNKYVVDNLNLIVNKKSTLTYKYSSVANLLF-NNYKYHDNIASN 440
++ K SES + D+ P +V+N VN K ++ +Y A + N K
Sbjct: 470 EVEKASESEESDEDDGPAPVIVEN-ESYVNLKKKISKRYDWQAKSVHAENGKICKQFRMK 528
Query: 439 NNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLS 323
+ + + +E S+ E+ T ++ ++ H +V+S
Sbjct: 529 QASRQFQSILQERQSLPAWEERET-ILNLLRKHQVVVIS 566
>BC060778-1|AAH60778.2| 658|Homo sapiens DHX57 protein protein.
Length = 658
Score = 31.9 bits (69), Expect = 3.2
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = -1
Query: 784 VTLLQSLGERKCGFLLGKLYEMYQDKNLFTLPIMLSRKESNEI---ETASNNFFVSPYVS 614
+TLL+ E + LL + Y D + LP+ + +N NN FVS +
Sbjct: 412 ITLLEE--ESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINNPACHKTVIPNNSFVSNQIP 469
Query: 613 QILKYSESVKF-PDNPPNKYVVDNLNLIVNKKSTLTYKYSSVANLLF-NNYKYHDNIASN 440
++ K SES + D+ P +V+N VN K ++ +Y A + N K
Sbjct: 470 EVEKASESEESDEDDGPAPVIVEN-ESYVNLKKKISKRYDWQAKSVHAENGKICKQFRMK 528
Query: 439 NNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLS 323
+ + + +E S+ E+ T ++ ++ H +V+S
Sbjct: 529 QASRQFQSILQERQSLPAWEERET-ILNLLRKHQVVVIS 566
>BC073962-1|AAH73962.1| 289|Homo sapiens Unknown (protein for
IMAGE:6472601) protein.
Length = 289
Score = 31.5 bits (68), Expect = 4.3
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 2/167 (1%)
Frame = -1
Query: 739 LGKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNK 560
+G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 134 IGLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPER 192
Query: 559 YVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHI 386
+ + L+ N S FN ++ I S+ E L +++K ++ +
Sbjct: 193 KTLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFEL 240
Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 245
V T K N +V F ER+ E + + + DV
Sbjct: 241 V----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 283
>BC031573-1|AAH31573.1| 710|Homo sapiens neuronal guanine
nucleotide exchange factor protein.
Length = 710
Score = 31.5 bits (68), Expect = 4.3
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 2/167 (1%)
Frame = -1
Query: 739 LGKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNK 560
+G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 175 IGLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPER 233
Query: 559 YVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHI 386
+ + L+ N S FN ++ I S+ E L +++K ++ +
Sbjct: 234 KTLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFEL 281
Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 245
V T K N +V F ER+ E + + + DV
Sbjct: 282 V----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 324
>AJ238899-1|CAC00686.1| 425|Homo sapiens guanine nucleotide
exchange factor protein.
Length = 425
Score = 31.5 bits (68), Expect = 4.3
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 2/167 (1%)
Frame = -1
Query: 739 LGKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNK 560
+G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 17 IGLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPER 75
Query: 559 YVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHI 386
+ + L+ N S FN ++ I S+ E L +++K ++ +
Sbjct: 76 KTLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFEL 123
Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 245
V T K N +V F ER+ E + + + DV
Sbjct: 124 V----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 166
>AC016692-1|AAX93288.1| 582|Homo sapiens unknown protein.
Length = 582
Score = 31.5 bits (68), Expect = 4.3
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 2/167 (1%)
Frame = -1
Query: 739 LGKLYEMYQDKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNK 560
+G LY+ Y+DK+ I R++ EIE +N S + + E + P +PP +
Sbjct: 47 IGLLYQEYRDKSTLQ-EIETRRQQDAEIEDNTNGSPASEDTPEEEEEEEEEEEPASPPER 105
Query: 559 YVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENL--KKVKKEDGSMHI 386
+ + L+ N S FN ++ I S+ E L +++K ++ +
Sbjct: 106 KTLPQICLLSNPHSR------------FNLWQDLPEIRSSGVLEILQPEEIKLQEAMFEL 153
Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDV 245
V T K N +V F ER+ E + + + DV
Sbjct: 154 V----TSEASYYKSLNLLVSHFMENERIRKILHPSEAHILFSNVLDV 196
>D86958-1|BAA13194.2| 1593|Homo sapiens KIAA0203 protein.
Length = 1593
Score = 30.7 bits (66), Expect = 7.5
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -1
Query: 517 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 350
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 860 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 918
Query: 349 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 197
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 919 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 969
>BC017556-1|AAH17556.1| 1594|Homo sapiens RB1-inducible coiled-coil 1
protein.
Length = 1594
Score = 30.7 bits (66), Expect = 7.5
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -1
Query: 517 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 350
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 858 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916
Query: 349 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 197
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 917 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967
>AK057423-1|BAB71479.1| 433|Homo sapiens protein ( Homo sapiens
cDNA FLJ32861 fis, clone TESTI2003589. ).
Length = 433
Score = 30.7 bits (66), Expect = 7.5
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = -1
Query: 784 VTLLQSLGERKCGFLLGKLYEMYQDKNLFTLPIMLSRKESNEI---ETASNNFFVSPYVS 614
+TLL+ E + LL + Y D + LP+ + +N NN FVS +
Sbjct: 310 ITLLEE--ESEIVKLLTNTHHKYSDPPVNFLPVPSRTRINNPACHKTVIPNNSFVSNQIP 367
Query: 613 QILKYSESVKF-PDNPPNKYVVDNLNLIVNKKSTLTYKY 500
++ K SES + D+ P +V+N VN K ++ +Y
Sbjct: 368 EVEKTSESEESDEDDGPAPVIVEN-ESYVNLKKKISKRY 405
>AB059622-1|BAB69690.1| 1594|Homo sapiens Rb1-inducible coiled coil
protein protein.
Length = 1594
Score = 30.7 bits (66), Expect = 7.5
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = -1
Query: 517 TLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN----V 350
TL K+ L N Y+ + EN K+KK G + +E+ L QN DN V
Sbjct: 858 TLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVL-QNKDNEFALV 916
Query: 349 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHM 197
K V+ +NE+ + + + + EIK++ S+ I + K H+
Sbjct: 917 KHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHV 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,188,403
Number of Sequences: 237096
Number of extensions: 1878385
Number of successful extensions: 7128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7128
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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