Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17n05
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-6|CAI79238.1| 143|Caenorhabditis elegans Hypothetical pr... 32 0.48
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 32 0.48
AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical ... 30 1.9
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 29 3.4
Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical pr... 29 5.9
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 29 5.9
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 5.9
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 28 7.8
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro... 28 7.8
AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical... 28 7.8
>Z80223-6|CAI79238.1| 143|Caenorhabditis elegans Hypothetical
protein F26D10.13 protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.48
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -1
Query: 475 NNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQ---YLTQNVDNVKGHNFIVLSFKNEER 305
+N+ + S + E+LKK+ ++D +M ++ ++T V G N+ F EE
Sbjct: 51 SNFNFKFCKVSGKSVEDLKKILEQDPNMSTTKKSNHFVTSKVTK-DGANY---KFDYEEF 106
Query: 304 LTIAKKNEEFYWISGEIKDVDASQV 230
L + KN+EFY G I DA +V
Sbjct: 107 LLL--KNDEFYKAEGTIYFQDAPKV 129
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 32.3 bits (70), Expect = 0.48
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = -1
Query: 457 DNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEE 278
++I ++ + ++ +EDG+ + +QY +N + V H NEE LT K++E
Sbjct: 54 ESIYDDDGSIQYEEYIEEDGTYDMNQQYGVENQEYVDAHYINT----NEEYLT-GKEHEM 108
Query: 277 FYWISGE---IKDVDASQVIQKYNRFKH 203
Y + G ++ + + ++KY KH
Sbjct: 109 VYQLFGNTATVEPISTEKRLEKYPELKH 136
>AL031632-5|CAE11314.1| 324|Caenorhabditis elegans Hypothetical
protein Y32B12B.7 protein.
Length = 324
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +2
Query: 212 SIIFLNYLTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV 391
SII +L V +F+L K+ L+Y PLF+ + F+ + +Q+ +
Sbjct: 126 SIILFCFLRVVLLFSLDHVTEKIGRLLAYLSPLFIIFAFLLALPRFFTLSTCAQLGWPFP 185
Query: 392 HAAVLL 409
H A+++
Sbjct: 186 HGAIII 191
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 484 LLFNNYKYHDNIASNNNAENLKKVKKE 404
LLF N+ YH + NN +KK KKE
Sbjct: 254 LLFANFFYHAYVKKNNRYTEVKKDKKE 280
>Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical
protein T25E12.11 protein.
Length = 327
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Frame = +2
Query: 215 IIFLNYLTSVYIFNLARNPIKLFVF-------LSYSQPL-FVFERQYYKIVTFYIIHILS 370
I+F+ ++TS++IF++ + I L +F L Y P+ F F+ Q + + YI +
Sbjct: 98 IMFIFFMTSIFIFHILQQTIHLLLFLLAIINSLKYHLPIHFAFKSQDF--IRKYITPL-- 153
Query: 371 QILFDNVHAAVLLLN 415
+ F ++ AA +L+
Sbjct: 154 NVFFISLDAAAFMLH 168
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 691 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 569
P RKE+ E+E N YV Q+ ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 691 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 569
P RKE+ E+E N YV Q+ ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 586 KFPDNPPNKYVVDNLNLIVNKKSTLTYKYSS--VANLLFNNYKYHDNIASN 440
+FP +P + ++DN+++I K+ S + N+ +N K+ DN S+
Sbjct: 505 EFPSSPLHAVLLDNVSVIEQKRGHAGILISGGWIQNVGMHNLKFKDNAVSS 555
>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
protein C25D7.3 protein.
Length = 2150
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1
Query: 673 KESNEIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNLIVNKKSTLTYKYS 497
+E N+ E + F+VS + + S+ VKFP N KY N ++S +TY
Sbjct: 627 REYNK-EKEKHPFYVSSSLPEFASTSDFVKFPISNTGIKYTAPRRNQPKVQRSLVTYTRF 685
Query: 496 SVANLLFNNYKYHDNIASNNNAENLKKVKKED 401
+A L ++ + + N L+K+ E+
Sbjct: 686 RLAELEDKDFSFPEEKMLEKN-RLLEKLNFEE 716
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 661 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 536
E++ S ++ S +SQ+L+Y+ FP D PPN+ V N+ L
Sbjct: 219 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 257
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -1
Query: 661 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 536
E++ S ++ S +SQ+L+Y+ FP D PPN+ V N+ L
Sbjct: 382 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 420
>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
protein protein.
Length = 2150
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -1
Query: 673 KESNEIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNLIVNKKSTLTYKYS 497
+E N+ E + F+VS + + S+ VKFP N KY N ++S +TY
Sbjct: 627 REYNK-EKEKHPFYVSSSLPEFASTSDFVKFPISNTGIKYTAPRRNQPKVQRSLVTYTRF 685
Query: 496 SVANLLFNNYKYHDNIASNNNAENLKKVKKED 401
+A L ++ + + N L+K+ E+
Sbjct: 686 RLAELEDKDFSFPEEKMLEKN-RLLEKLNFEE 716
>AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical
protein Y51A2D.20 protein.
Length = 138
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 619 VSQILKYSESVKFPDNPPNKYVVDNLNLIVNKKSTLTYKYSSV 491
+ + L Y E+V P NPP+ + +N +L N +ST+ ++Y V
Sbjct: 99 IDKTLSYYENVNLPQNPPD--LPENSDLKPN-ESTIWHEYGCV 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,731,994
Number of Sequences: 27780
Number of extensions: 357220
Number of successful extensions: 1037
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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