Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17n01
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    27   1.6  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    26   3.7  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    26   3.7  
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50...    25   8.6  

>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 151 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAA 29
           PVAP++    P + +  ++ +   PA +  S+KN   T AA
Sbjct: 7   PVAPASPSPSPAAAADGEEGEGPAPAAEDDSLKNDVYTAAA 47


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 107 RQQEKKKLSSGQTTIFYKKSPQHYCGSNTFKWLA 6
           +++++K + +G    FYKK P+    SN  + LA
Sbjct: 139 KERQRKSMEAGAIPSFYKKKPEDGSISNRVQKLA 172


>03_06_0353 -
           33317015-33318235,33318567-33318824,33319587-33319904,
           33319949-33320011,33320103-33320496,33320684-33320796,
           33320932-33321639,33321667-33323199,33323395-33323607,
           33323718-33324700,33324890-33325423,33325694-33325820,
           33326083-33326162,33327347-33327377,33327949-33328053,
           33328119-33328124,33328349-33328985,33329144-33329478,
           33330394-33331113
          Length = 2792

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 151 PVAPSTTEYVPTSISGSKKRKNSVPAKQ 68
           PVAP+T    P      KK+K   PA Q
Sbjct: 125 PVAPATAAAAPGQPQPKKKKKQKEPAPQ 152


>07_01_0069 +
           505291-505327,505726-505956,506317-506652,507025-507372,
           507735-508594,508902-508971,509157-509371,509477-509537,
           509606-509715,510644-510694,510794-510916
          Length = 813

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 100 KKRKNSVPAKQRSSIKNRRNTTAAPTLLSG 11
           K+RKN    +++    NRR+    P+LL G
Sbjct: 420 KRRKNRDRRRRKKENANRRSNVQNPSLLPG 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,664,086
Number of Sequences: 37544
Number of extensions: 67711
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)